SSDB Paralog Search Result

KEGG ID :sfd:USDA257_c30360 (364 a.a.)
Definition:DNA ligase; K01971 DNA ligase (ATP)
Update status:T02188 (aah,aal,abp,abv,adl,ahd,ahp,ahr,asg,bamt,bans,ble,bmet,bor,bpsd,bpsm,bpum,bsc,bsf,bvt,ccf,ccoi,ccy,cjer,clt,cmn,cmo,cput,ctec,ctes,ctfw,dav,dja,dsq,echj,echl,echs,ecoh,elv,fme,gbc,gbs,gtr,hcs,hct,hlr,hpyb,hym,jag,koy,kpa,kps,lfp,lmoq,lmox,lmr,mcs,mdm,mlr,mrr,mtq,mtut,mtuu,ngl,npa,nvn,oas,paei,paeo,patr,pbc,pch,pco,pes,pfp,pmum,ppac,ppq,psq,puf,rbc,rla,rpj,rus,sagp,sauj,sauk,sauq,saut,sauv,sauw,saux,sauy,shs,sla,slv,ssuy,tap,tcm,tms,tpas,vir,wse,yel,zmr : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:

Search Result : 15 hits

       Entry                                                 KO       len  SW-score  bits  identity overlap
-------------------------------------------------------------------  ----------------------------------------
sfd:USDA257_c16580 ATP-dependent DNA ligase YkoU (EC:6.  K01971     850     369      90    0.296    351     
sfd:USDA257_c52060 ATP-dependent DNA ligase YkoU (EC:6.  K01971     865     360      88    0.276    330     
sfd:USDA257_c15160 ATP-dependent DNA ligase YkoU (EC:6.  K01971     820     347      85    0.300    340     
sfd:USDA257_c29030 DNA ligase-like protein               K01971     324     329      81    0.286    339     
sfd:USDA257_c41770 DNA polymerase LigD ligase region (E  K01971     265     293      73    0.317    246     
sfd:USDA257_c28000 DNA ligase-like protein               K01971     291     226      57    0.304    247     
sfd:USDA257_c53830 DNA ligase Lig (EC:6.5.1.1)           K01971     537     224      57    0.268    351     
sfd:USDA257_c05920 RNA methyltransferase R00878 (EC:2.1  K03215     415     121      33    0.222    225     
sfd:USDA257_p05520 hypothetical protein                             516     111      31    0.236    233     
sfd:USDA257_c30170 gliding motility regulatory protein   K03407     710     110      31    0.263    156     
sfd:USDA257_c04700 guanosine-5'-triphosphate,3'-diphosp  K01524     498     106      30    0.228    307     
sfd:USDA257_c22080 L-sorbosone dehydrogenase (EC:1.1.1.             436     104      30    0.256    160     
sfd:USDA257_c28160 DNA polymerase LigD ligase region     K01971     190     102      29    0.302    106     
sfd:USDA257_c39730 hypothetical protein                            1167     101      29    0.249    237     
sfd:USDA257_c43640 L-sorbosone dehydrogenase (EC:1.1.1.             446     101      29    0.273    161     

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]