SSDB Paralog Search Result

KEGG ID :smk:Sinme_2962 (537 a.a.)
Definition:ATP dependent DNA ligase; K01971 DNA ligase (ATP)
Update status:T01521 (abp,abv,adl,bamt,bans,bor,bpsd,bpsm,bsc,ccf,ccoi,ccy,clt,cput,ctec,ctfw,dav,dsq,ecoh,fme,gbc,gbs,gtr,hlr,jag,lmoq,lmox,mlr,mrr,mtq,mtut,mtuu,npa,oas,paei,paeo,pco,pes,pfp,psq,rpj,rus,sauj,sauk,sauq,saut,sauv,sauw,saux,sauy,shs,sla,ssuy,tms,wse,zmr : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:

Search Result : 11 hits

       Entry                                                 KO       len  SW-score  bits  identity overlap
-------------------------------------------------------------------  ----------------------------------------
smk:Sinme_5055 DNA ligase D                                         628     266      66    0.269    334     
smk:Sinme_2798 DNA polymerase LigD polymerase domain-co  K01971     865     236      60    0.257    354     
smk:Sinme_4162 ATP dependent DNA ligase                  K01971     355     211      54    0.283    360     
smk:Sinme_4343 DNA polymerase LigD polymerase domain-co  K01971     818     174      46    0.250    328     
smk:Sinme_1471 carbamoyl-phosphate synthase large subun  K01955    1163     133      36    0.223    458     
smk:Sinme_0980 phosphoribosylformylglycinamidine cyclo-  K01933     356     117      33    0.287    195     
smk:Sinme_1235 FAD linked oxidase domain-containing pro             441     114      32    0.240    204     
smk:Sinme_2675 hypothetical protein                                 298     109      31    0.267    288     
smk:Sinme_4267 adenylate/guanylate cyclase with Chase s             649     103      29    0.267    217     
smk:Sinme_2038 GntR family transcriptional regulator                408     102      29    0.299    127     
smk:Sinme_2047 RND family efflux transporter MFP subuni  K13888     426     100      29    0.247    255     

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]