SSDB Paralog Search Result

KEGG ID :vpe:Varpa_0532 (869 a.a.)
Definition:DNA ligase d; K01971 bifunctional non-homologous end joining protein LigD
Update status:T01392 (aaus,agw,arg,bacl,bgo,bgu,bmeg,bmel,fil,fiy,lis,mavu,mbac,mbw,mby,mef,mek,meq,metm,mls,paly,pck,pfre,pih,pko,pox,pri,reb,rmc,sals,shh,sns,sphi,srd,syb,vba,vcf,vcx,vcz,xbv,ypf,ypo : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:

Search Result : 9 hits

       Entry                                                 KO       len  SW-score  bits  identity overlap
-------------------------------------------------------------------  ----------------------------------------
vpe:Varpa_2796 DNA ligase d                              K01971     854    3034     697    0.546    865     
vpe:Varpa_2997 ATP dependent DNA ligase                             366     307      76    0.285    355     
vpe:Varpa_5498 ATP dependent DNA ligase                  K10747     551     238      60    0.273    311     
vpe:Varpa_2840 ATP dependent DNA ligase                  K10747     284     177      46    0.310    258     
vpe:Varpa_3952 swib/mdm2 domain-containing protein                  148     123      34    0.519    54      
vpe:Varpa_1011 histone h1/h5 family protein, hct subfam             177     119      33    0.508    59      
vpe:Varpa_5465 acyltransferase, ws/dgat/mgat                        572     117      33    0.421    76      
vpe:Varpa_1038 hypothetical protein                                 370     108      30    0.328    116     
vpe:Varpa_0959 diaminopimelate epimerase                 K01778     300     106      30    0.330    91      

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]