SSDB Paralog Search Result

KEGG ID :vpe:Varpa_0532 (869 a.a.)
Definition:DNA ligase d; K01971 DNA ligase (ATP)
Update status:T01392 (abaa,abau,abk,abw,babr,bamy,banh,bhm,blx,bmee,bsui,bthe,bthm,cbz,cdo,cfx,cgj,cgq,cjv,cmg,cmm,cun,cuq,cus,echp,echv,echw,ecla,eclc,fpq,frf,kom,kph,kpk,kpq,kpz,law,lia,lii,lio,may,mbz,mcat,mfc,mhom,mie,msn,ngi,npn,ocu,paea,paee,paeh,paej,ppnm,pstt,pstu,psw,sagc,smer,smia,smub,stax,sthe,syj,tki,vcq,zmc : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:

Search Result : 9 hits

       Entry                                                 KO       len  SW-score  bits  identity overlap
-------------------------------------------------------------------  ----------------------------------------
vpe:Varpa_2796 DNA ligase d                              K01971     854    3034     697    0.546    865     
vpe:Varpa_2997 ATP dependent DNA ligase                  K01971     366     307      76    0.285    355     
vpe:Varpa_5498 ATP dependent DNA ligase                  K01971     551     238      60    0.273    311     
vpe:Varpa_2840 ATP dependent DNA ligase                  K01971     284     177      46    0.310    258     
vpe:Varpa_3952 swib/mdm2 domain-containing protein                  148     123      34    0.519    54      
vpe:Varpa_1011 histone h1/h5 family protein, hct subfam             177     119      33    0.508    59      
vpe:Varpa_5465 acyltransferase, ws/dgat/mgat                        572     117      33    0.421    76      
vpe:Varpa_1038 hypothetical protein                                 370     108      30    0.328    116     
vpe:Varpa_0959 diaminopimelate epimerase                 K01778     300     106      30    0.330    91      

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]