GFIT result for T02190

[Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster]

amm:AMES_5142
(314 a.a.)
 
--
 
    [tr:G0FQR1_AMYMS] lig; ATP-dependent DNA ligase
DBHit(Length)Over-
lap
Ident.
(%)
ScoremarginPara-
log
Cont.KOOrthCurrent Annotation
> amd:AMED_5204(314)314100.02169(1594)6<>     [tr:A0A0H3D9J5_AMYMU] lig; ATP-dependent DNA ligase
> amn:RAM_26510(314)314100.02169(1594)6<>     [tr:G0FQR1_AMYMS] ATP-dependent DNA ligase
> amz:B737_5142(314)314100.02169(1594)6<>    lig; ATP-dependent DNA ligase
> ngv:CDO52_22145(317)31365.21439(1133)0<-    ATP-dependent DNA ligase
> pmad:BAY61_01235(306)30368.01414(760)0<-    ATP-dependent DNA ligase
> sen:SACE_5682(333)30864.01331(852)7--     [tr:A4FLE3_SACEN] DNA ligase, ATP-dependent
> tee:Tel_12770(335)31359.11281
0<- K01971  ligD  [tr:A0A0S2TFK7_9GAMM] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mie:LG41_14150(332)31060.31262(668)4<-     [tr:X8CFR3_MYCIT] ATP-dependent DNA ligase
> mir:OCQ_30550(332)31060.31262(668)3<-     [tr:A0A1X2L0J8_9MYCO] DNA polymerase LigD ligase subunit
> mit:OCO_29890(332)31060.31262(668)3<-    DNA polymerase LigD ligase subunit
> mmm:W7S_14830(332)31060.31262(668)3<-     [tr:I2AF57_9MYCO] DNA polymerase LigD ligase subunit
> mchi:AN480_15575(332)31060.01252(658)0<-    ATP-dependent DNA ligase
> mia:OCU_29800(332)31059.71248(654)3<-     [tr:H8IQK0_MYCIA] DNA polymerase LigD ligase subunit
> myo:OEM_29110(332)31059.41244(650)3<-     [tr:S4ZA35_9MYCO] DNA polymerase LigD ligase subunit
> mmal:CKJ54_13680(332)31059.01243(646)0<-    ATP-dependent DNA ligase
> mav:MAV_3148(332)31059.01228(634)3--     [tr:A0A0H3A2H7_MYCA1] ligD; DNA polymerase LigD, ligase domain
> mava:LA64_14300(332)31059.01228(633)2--    ATP-dependent DNA ligase
> mavd:NF84_14150(332)31059.01228(633)2--    ATP-dependent DNA ligase
> mavr:LA63_14305(332)31059.01228(633)3--    ATP-dependent DNA ligase
> mao:MAP4_2518(332)31058.71226(632)3--    ATP-dependent DNA ligase
> mavi:RC58_12520(332)31058.71226(632)3--    ATP-dependent DNA ligase
> mavu:RE97_12540(332)31058.71226(632)3--    ATP-dependent DNA ligase
> mpa:MAP_1329c(354)31058.71226(632)0--     [tr:Q740M1_MYCPA] hypothetical protein
> svl:Strvi_5345(337)30858.41223(808)8--     [tr:G2NUQ9_STRVO] DNA polymerase LigD, ligase domain protein
> sals:SLNWT_5554(334)30459.21189(846)5-- K01971  ligD  [tr:A0A0B5F2W9_STRA4] DNA polymerase LigD, ligase domain-containing protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> sct:SCAT_5457(313)31156.61167(796)3->    ligD; DNA polymerase LigD, ligase domain
> scy:SCATT_54560(327)31156.61167(796)4->     [tr:G8WVS0_STREN] DNA polymerase LigD ligase subunit
> bbt:BBta_7782(351)31155.31140(541)3<-     [tr:A5ETW8_BRASB] putative ATP-dependent DNA ligase
> rci:RCIX1968(353)31255.11131(886)3<-     [tr:Q0W3B2_METAR] predicted ATP-dependent DNA ligase
> mpd:MCP_2126(334)31352.11120(894)1<-     [tr:D1Z0H6_METPS] putative ATP-dependent DNA ligase
> blin:BLSMQ_1369(316)31054.51092(536)0<-     [tr:A0A1D7W1X1_BRELN] ATP-dependent DNA ligase
> lok:Loa_02405(334)30750.21015(291)1--     [tr:W0BH41_9GAMM] DNA polymerase LigD, ligase domain protein
> amq:AMETH_0282(237)22665.5997(261)5->     [tr:A0A076MI15_AMYME] lig; DNA ligase, ATP-dependent
> ank:AnaeK_0832(684)31747.0884(442)136-- K01971  ligD  [tr:B4UEC1_ANASK] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> dpb:BABL1_gene_166(342)31343.1883(603)0<-     [tr:V6DIT8_9DELT] ATP-dependent DNA ligase
> ade:Adeh_0784(658)31846.5874(431)105-- K01971  ligD  [tr:Q2IP30_ANADE] ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hrb:Hrubri_2562(861)31845.9874()0-> K01971  ligD  [tr:A0A0U3LYM1_9BURK] ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> acp:A2cp1_0836(683)31746.4871(438)136-- K01971  ligD  [tr:B8JDU3_ANAD2] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nmv:NITMOv2_2657(895)31647.8870(532)3-- K01971  ligD  [tr:A0A0K2GDN5_9BACT] ykoU; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hse:Hsero_2271(856)31744.5857(644)1-> K01971  ligD  [tr:D8IUA8_HERSS] ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hsz:ACP92_11350(856)31744.5857(644)0-> K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bjp:RN69_20745(315)31645.9832(6)7-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bju:BJ6T_42720(315)31645.9832(6)9--     [tr:G7D3R3_BRAJP] hypothetical protein
> abac:LuPra_01460(663)31045.5829(28)0-- K01971  ligD  [tr:A0A143PIN6_9BACT] ykoU_2; putative ATP-dependent DNA ligase YkoU; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ccro:CMC5_051300(404)31745.7824(565)7-- K01971  ligD  [tr:A0A0K1EK48_CHOCO] ligD; DNA polymerase LigD, ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axo:NH44784_059851(870)31846.5823(451)23-> K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> llu:AKJ09_09606(855)31846.5823(219)9-> K01971  ligD  [tr:A0A0K1QB33_9DELT] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axs:LH59_19425(868)31846.5821(464)19-> K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> dpy:BA022_07305(837)31545.4820(544)0-> K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nja:NSJP_1173(864)32746.2819(524)0-- K01971  ligD  [tr:A0A1W1I2Z9_9BACT] ligD; Multifunctional non-homologous end joining protein LigD [Includes: 3'-phosphoesterase; DNA ligase D; DNA repair polymerase]; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axn:AX27061_4222(874)31846.2818(444)35-> K01971  ligD ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axx:ERS451415_04244(874)31846.2818(444)0-> K01971  ligD  [tr:A0A0D6I839_ALCXX] Putative DNA ligase-like protein Rv0938/MT0965; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> brc:BCCGELA001_08150(315)31646.2817(220)0--     [tr:A0A109QA74_9BRAD] DNA ligase
> scu:SCE1572_21330(687)31645.6817(464)47-- K01971  ligD  [tr:S4Y1N2_SORCE] hypothetical protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ajs:Ajs_2523(837)31545.4816(546)10-> K01971  ligD  [tr:A1W8V8_ACISJ] ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> afw:Anae109_0832(656)31744.8813(13)16-- K01971  ligD  [tr:A7H8J7_ANADF] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bpt:Bpet3441(822)31744.2813()1-> K01971  ligD  [tr:A9HXI5_BORPD] unnamed protein product; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bbro:BAU06_06860(884)31744.8811(581)0-> K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> fpsz:AMR72_01115(881)31143.7811(118)0-> K01971  ligD  [tr:A0A0P0U5U7_FLAPS] hypothetical protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> brad:BF49_3871(315)31645.6809(216)0--     [tr:A0A160UEZ6_BRASZ] ATPdependent DNA ligase EC 6511
> nlc:EBAPG3_007500(847)31644.3805()0-> K01971  ligD  [tr:A0A1W6STE2_9PROT] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rhy:RD110_14845(830)31644.0804(539)0-> K01971  ligD  [tr:A0A1P8JX24_9BURK] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ruf:TH63_03090(857)31145.3803()0-- K01971  ligD  [tr:A0A0H4VGU1_9BACT] DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pput:L483_11550(821)31945.5800(45)2-- K01971  ligD  [tr:R9V1S5_PSEPU] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> jaz:YQ44_08770(835)32146.1799(501)0-- K01971  ligD  [tr:A0A1I9XVX1_9BURK] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> tbd:Tbd_2247(846)31645.9799(622)2-> K01971  ligD  [tr:Q3SGP7_THIDA] DNA ligase, ATP-dependent, putative; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hht:F506_12900(852)31942.3798(557)2-> K01971  ligD  [tr:A0A0K2BE58_9BURK] DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hco:LOKO_00656(851)30944.3794(689)0-- K01971  ligD  [tr:A0A0X8HBT1_9GAMM] Putative DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> adt:APT56_19400(885)31845.0793(438)0-> K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rsc:RCFBP_20893(870)32243.8793()15-> K01971  ligD  [tr:D8NP23_RALSL] ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bja:blr8031(316)31545.1792(194)8--     [tr:Q89BW7_BRADU] DNA ligase
> boh:AKI39_06670(873)31543.8790()0-> K01971  ligD  [tr:A0A1B2R0Y2_9BORD] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pls:VT03_22120(898)31144.7790(8)0-- K01971  ligD  [tr:A0A142X1L6_9PLAN] Putative DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppb:PPUBIRD1_2515(834)32044.1790(587)1-- K01971  ligD ligD; LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppu:PP_3260(833)32043.8789(588)1-- K01971  ligD  [tr:Q88HU3_PSEPK] ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rsl:RPSI07_2772(872)32243.8789(681)5-> K01971  ligD  [tr:D8NY76_RALSL] ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> scl:sce3523(762)31645.9787(439)82-- K01971  ligD  [tr:A9GRV1_SORC5] unnamed protein product; High confidence in function and specificity; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pmon:X969_12915(830)31942.6785(584)2-- K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pmot:X970_12560(830)31942.6785(584)2-- K01971  ligD  [tr:V9V1K1_9PSED] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppg:PputGB1_2635(833)31943.6785(571)1-- K01971  ligD  [tr:B0KSK9_PSEPG] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppj:RK21_01966(830)31942.6785(573)3-- K01971  ligD  [tr:A0A099N1D9_9PSED] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> dfo:Dform_00676(320)30643.8784
0-> K01971  ligD  [tr:A0A1P8F6C5_9CHLR] ligD; ATP-dependent DNA ligase LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> gba:J421_4010(325)30545.6783(17)22-- K01971  ligD  [tr:W0RM59_9BACT] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ote:Oter_4309(603)32845.1783(410)5<- K01971  ligD  [tr:B1ZP92_OPITP] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppuh:B479_13240(830)31942.6783(586)2-- K01971  ligD  [tr:L0FHZ0_PSEPU] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pstt:CH92_11295(852)31844.3783(590)1-- K01971  ligD  [tr:W8R7U3_PSEST] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> aba:Acid345_0779(608)32242.5780(396)4-- K01971  ligD  [tr:Q1ITL6_KORVE] ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppt:PPS_2715(830)31942.3780(586)2-- K01971  ligD  [tr:F8FV15_PSEP6] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppud:DW66_2974(830)31942.3780(579)3-- K01971  ligD  [tr:A0A059V1W0_PSEPU] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> psv:PVLB_14550(822)31942.9780()0-- K01971  ligD  [tr:U5VFX4_9PSED] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cfu:CFU_1974(830)31744.2779(604)1-> K01971  ligD  [tr:G0A8U2_COLFT] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppi:YSA_10746(833)32043.8778(579)2-- K01971  ligD  [tr:I3V4C3_PSEPU] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rpi:Rpic_0501(863)32442.3778()2-> K01971  ligD  [tr:B2UGG9_RALPJ] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rta:Rta_07780(819)31744.2777(374)29-- K01971  ligD  [tr:F5XXQ6_RAMTT] ATP-dependent DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pol:Bpro_3003(882)31543.5776()2-> K01971  ligD  [tr:Q128X5_POLSJ] ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ppx:T1E_5615(833)32043.8775(576)1-- K01971  ligD  [tr:I7CDZ3_PSEPT] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vaa:AX767_14310(838)31642.7775(538)0-- K01971  ligD  [tr:A0A126ZG35_9BURK] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vpd:VAPA_1c17500(851)31742.3775(484)4-- K01971  ligD  [tr:T1X8H8_VARPD] putative DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pen:PSEEN2767(820)31943.6774()3-- K01971  ligD  [tr:Q1I9X2_PSEE4] putative DNA ligase, ATP-dependent; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vap:Vapar_1660(847)31742.3774(494)9-- K01971  ligD  [tr:C5CTW0_VARPS] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
... ... ...