GFIT result for
seep
|
GFIT result for
seep
|
| [Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster] |
| seep:I137_13920 (330 a.a.) |
-- |
K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |||||
| DBHit(Length) | Over- lap | Ident. (%) | Score | Para- log | Cont. | KO | Orth | Current Annotation | |
|---|---|---|---|---|---|---|---|---|---|
| > cars:E1B03_21025(330) | 330 | 100.0 | 2100 | 4 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cbra:A6J81_22280(330) | 330 | 100.0 | 2100 | 4 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cens:P2W74_04745(?) | 330 | 100.0 | 2100 | 0 | -- | - | |||
| > cfd:CFNIH1_00730(330) | 330 | 100.0 | 2100 | 4 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cib:HF677_004935(?) | 330 | 100.0 | 2100 | 0 | -- | - | |||
| > cie:AN232_09630(330) | 330 | 100.0 | 2100 | 4 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cif:AL515_18390(330) | 330 | 100.0 | 2100 | 4 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > citz:E4Z61_21755(330) | 330 | 100.0 | 2100 | 4 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cix:M4I31_04900(330) | 330 | 100.0 | 2100 | 4 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cko:CKO_04101(330) | 330 | 100.0 | 2100 | 3 | -> | K03087 | rpoS | hypothetical protein; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cpar:CUC49_14175(330) | 330 | 100.0 | 2100 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cpot:FOB25_16405(330) | 330 | 100.0 | 2100 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cwe:CO701_03620(330) | 330 | 100.0 | 2100 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cyo:CD187_05120(330) | 330 | 100.0 | 2100 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > salz:EOS98_04875(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sbg:SBG_2538(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sbz:A464_2942(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seb:STM474_3064(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sec:SCH_2856(330) | 330 | 100.0 | 2100 | 3 | -> | K03087 | rpoS | rpoS; sigma S (sigma 38) factor of RNA polymerase, major sigmafactor during stationary phase; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sed:SeD_A3233(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > see:SNSL254_A3129(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seeb:SEEB0189_005535(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seec:CFSAN002050_20935(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sef:UMN798_3172(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seh:SeHA_C3113(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sei:SPC_2966(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sej:STMUK_2913(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sek:SSPA2592(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sel:SPUL_2922(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sem:STMDT12_C29730(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sena:AU38_14035(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > senb:BN855_29670(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > send:DT104_29221(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sene:IA1_14010(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > senh:CFSAN002069_17650(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seni:CY43_15260(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > senj:CFSAN001992_18920(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > senl:IY59_14640(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > senn:SN31241_40170(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seno:AU37_14045(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > senq:AU40_15800(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sens:Q786_14090(330) | 330 | 100.0 | 2100 | 3 | <- | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > senv:AU39_14045(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seo:STM14_3526(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > set:SEN2763(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > setc:CFSAN001921_02455(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > setu:STU288_14775(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sev:STMMW_28871(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sew:SeSA_A3074(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sey:SL1344_2903(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > spt:SPA2780(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > stm:STM2924(330) | 330 | 100.0 | 2100 | 4 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > sty:STY3049(330) | 330 | 100.0 | 2100 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > seg:SG2827(330) | 330 | 99.7 | 2094 | 3 | <> | K03087 | rpoS | rpoS; RNA polymerase sigma subunit RpoS (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ses:SARI_00033(330) | 330 | 99.7 | 2092 | 3 | <> | K03087 | rpoS | hypothetical protein; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > caf:AL524_08065(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cama:F384_14925(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > cfar:CI104_19920(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ctel:GBC03_09825(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eab:ECABU_c30160(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eal:EAKF1_ch3253(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ebd:ECBD_0983(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase, sigma 70 subunit, RpoD subfamily; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ebe:B21_02556(330) | 330 | 99.4 | 2088 | 2 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S (sigma 38) factor, subunit of RNA polymerase sigma 38; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ebl:ECD_02591(330) | 330 | 99.4 | 2088 | 2 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S (sigma 38) factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ebr:ECB_02591(330) | 330 | 99.4 | 2088 | 2 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecf:ECH74115_3992(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eci:UTI89_C3111(342) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eck:EC55989_3012(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S (sigma 38) factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecl:EcolC_0971(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase, sigma 70 subunit, RpoD family; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecm:EcSMS35_2866(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecoa:APECO78_17295(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecob:C3029_17670(?) | 330 | 99.4 | 2088 | 0 | -- | - | |||
| > ecoh:ECRM13516_3458(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecoi:ECOPMV1_03001(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor rpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecol:LY180_13925(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecoo:ECRM13514_3592(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecos:EC958_3012(342) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | rpoS; sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecp:ECP_2722(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecs:ECs_3595(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma S factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecv:APECO1_3782(342) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecw:EcE24377A_3042(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecx:EcHS_A2879(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecy:ECSE_2993(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor S RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ecz:ECS88_3010(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S (sigma 38) factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ekf:KO11_09270(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eko:EKO11_1028(342) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | RNA polymerase, sigma 70 subunit, RpoD subfamily; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > elc:i14_3034(342) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | hypothetical protein; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eld:i02_3034(342) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | hypothetical protein; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > elf:LF82_1965(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor rpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > elh:ETEC_2932(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | RNA polymerase sigma factor (sigma-38); K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ell:WFL_14390(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | rpoS; RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eln:NRG857_13435(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > elr:ECO55CA74_16135(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > elu:UM146_02850(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > elw:ECW_m2947(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S (sigma 38) factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ema:C1192_21930(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > ena:ECNA114_2779(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | RpoS, RNA polymerase sigma factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eoc:CE10_3166(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S (sigma 38) factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eoh:ECO103_3283(330) | 330 | 99.4 | 2088 | 3 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S factor; K03087 RNA polymerase nonessential primary-like sigma factor | |
| > eoi:ECO111_3465(330) | 330 | 99.4 | 2088 | 4 | -> | K03087 | rpoS | rpoS; RNA polymerase, sigma S factor; K03087 RNA polymerase nonessential primary-like sigma factor | |