GFIT result for T00058

[Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster]

sme:SM_b20912
(364 a.a.)
 
--
 
K01971  ligD  [tr:Q92UC4_RHIME] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
DBHit(Length)Over-
lap
Ident.
(%)
ScoremarginPara-
log
Cont.KOOrthCurrent Annotation
> smel:SM2011_b20912(364)364100.02482(1368)9<> K01971  ligD  [tr:M4MLN3_SINM2] Putative ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> smq:SinmeB_1662(336)31191.61966(291)8-- K01971  ligD  [tr:A0A0E0UDQ1_SINMB] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> smi:BN406_00784(344)31188.71911(148)15-- K01971  ligD DNA polymerase LigD ligase region; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> smx:SM11_chr2371(345)31188.11907(865)15-- K01971  ligD  [tr:F7X3M8_SINMM] ligD; DNA polymerase LigD ligase region; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> smd:Smed_1305(343)31188.11892(400)6-> K01971  ligD  [tr:A6U925_SINMW] DNA polymerase LigD ligase region; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> sfd:USDA257_c29030(324)31172.31574(282)9-- K01971  ligD  [tr:I3X6G8_RHIFR] putative DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> same:SAMCFNEI73_pA0041(306)29473.81529(168)0-> K01971  ligD  [tr:A0A1L3LSE6_9RHIZ] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> sfh:SFHH103_01641(327)31169.81506(795)7-- K01971  ligD  [tr:G9A7A8_RHIFH] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> eah:FA04_33110(324)31265.41467(36)0-- K01971  ligD  [tr:A0A1S0RP02_ENSAD] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vg:26737567(330)31165.01436(260)0-- K01971  ligD  [tr:A0A076GD42_9CAUD] AWJ26_gp36; Sinorhizobium phage phiLM21; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rle:pRL110115(346)31560.01230(153)6-- K01971  ligD  [tr:Q1M6S1_RHIL3] putative DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rlg:Rleg_7010(350)31661.11230(26)7-- K01971  ligD  [tr:C6B7H2_RHILS] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> oah:DR92_4447(312)29661.11229(408)2--    ligD; DNA ligase D
> rhl:LPU83_1547(346)31658.21225(62)11-- K01971  ligD  [tr:W6R8I0_9RHIZ] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rlb:RLEG3_18615(348)31759.01223(163)7-- K01971  ligD  [tr:W0IG54_RHILT] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rlt:Rleg2_2396(349)31659.21222(141)5-- K01971  ligD  [tr:B5ZUW2_RHILW] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rga:RGR602_CH03287(347)31657.91211(178)6-- K01971  ligD  [tr:A0A0B4X7Y9_9RHIZ] ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rlu:RLEG12_29475(349)31657.91189(22)6-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> six:BSY16_6219(348)31457.31186(107)0-- K01971  ligD  [tr:A0A1B3MGL6_9RHIZ] ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rht:NT26_2255(346)31155.91183(16)0-- K01971  ligD  [tr:L0NGG3_9RHIZ] putative ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ead:OV14_c0035(348)31456.41181(10)6-- K01971  ligD  [tr:W8INW8_ENSAD] putative ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bop:AXW83_24590(346)31854.71157(369)0-- K01971  ligD  [tr:A0A126P296_9BRAD] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rel:REMIM1_PC00076(354)31455.71153(45)5-- K01971  ligD  [tr:S5SQX0_RHIET] ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bvv:BHK69_02820(346)31057.41151(28)0-- K01971  ligD  [tr:A0A1D7TWT4_9BRAD] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rei:IE4771_CH00561(350)31857.51148(9)6-- K01971  ligD  [tr:A0A060HVW7_RHIET] ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rep:IE4803_CH03783(347)29957.51147(453)4-- K01971  ligD  [tr:A0A0A8GK49_RHIET] ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rec:RHECIAT_CH0001158(350)31757.11145(53)4-- K01971  ligD  [tr:B3PSX3_RHIE6] probable ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rir:BN877_p0681(343)31554.61142(122)4-- K01971  ligD  [tr:U4QFY4_9RHIZ] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ata:AWN88_04510(343)31554.31131(58)0-- K01971  ligD  [tr:A0A109VSI2_RHIRD] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rtr:RTCIAT899_PB00395(354)31454.11125(324)2-- K01971  ligD  [tr:L0LRP5_RHITR] putative ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rhn:AMJ98_CH02611(350)31755.21118(46)0-- K01971  ligD ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ret:RHE_PE00251(354)31453.51107(387)4-- K01971  ligD  [tr:Q2K0P1_RHIEC] putative DNA ligase (ATP) protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rpha:AMC79_PB00198(355)30055.01104(393)0-- K01971  ligD ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> shz:shn_31120(351)31353.71104(368)0-- K01971  ligD  [tr:A0A1A9GC07_9RHIZ] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> atu:Atu5051(345)29954.21100(58)5-- K01971  ligD  [tr:A9CLR5_AGRFC] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rhx:AMK02_PE00261(354)31453.21099(367)0-- K01971  ligD ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> smer:DU99_19535(342)31653.21075(322)7--    ATP-dependent DNA ligase
> agr:AGROH133_14625(350)31949.81033(327)3-- K01971  ligD  [tr:F0LG13_AGRSH] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> atf:Ach5_49040(350)31950.21031(339)2-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ngg:RG540_CH06180(298)28249.3917(230)3--     [tr:A0A068SKX0_RHIGA] DNA polymerase LigD-like ligase domain-containing protein
> msl:Msil_3103(336)29846.3880(238)2-- K01971  ligD  [tr:B8EKY4_METSB] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> scu:SCE1572_21330(687)30445.4864(458)47-- K01971  ligD  [tr:S4Y1N2_SORCE] hypothetical protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> scl:sce3523(762)30445.1831(498)82-- K01971  ligD  [tr:A9GRV1_SORC5] unnamed protein product; High confidence in function and specificity; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rva:Rvan_0633(970)30245.7826(580)10-- K01971  ligD  [tr:E3HZV9_RHOVT] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> oan:Oant_4315(834)30446.7821(610)1-- K01971  ligD  [tr:A6X711_OCHA4] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bid:Bind_0382(644)30145.8809(564)2-- K01971  ligD  [tr:B2IE11_BEII9] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pye:A6J80_22380(845)32143.0796(532)0-- K01971  ligD  [tr:A0A1V0GYX4_9RHOB] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hmc:HYPMC_2434(356)30244.0793(553)1-- K01971  ligD  [tr:F8JHK1_HYPSM] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> sno:Snov_0819(842)32343.7788(529)6-- K01971  ligD  [tr:D7A5M0_STAND] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> llu:AKJ09_09606(855)32142.7786(283)9-- K01971  ligD  [tr:A0A0K1QB33_9DELT] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rhi:NGR_b04710(850)30941.7786(79)7-- K01971  ligD  [tr:Q6W1H3_SINFN] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> smeg:C770_GR4pC0120(609)29844.3786(29)8-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rbm:TEF_06740(852)33040.0780(538)0-- K01971  ligD  [tr:A0A192IGW8_9RHIZ] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> azc:AZC_1006(900)30644.4779(535)8-- K01971  ligD  [tr:A8HV36_AZOC5] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hdn:Hden_1069(356)32140.5779(520)1-- K01971  ligD  [tr:D8JV67_HYPDA] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mes:Meso_1150(845)30044.3778(438)3-- K01971  ligD  [tr:Q11J79_CHESB] ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> meso:BSQ44_02815(861)30045.0778(528)0-- K01971  ligD  [tr:A0A1L3SLZ4_9RHIZ] DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hdt:HYPDE_32333(356)30441.8771(506)1-- K01971  ligD  [tr:N0BDC6_9RHIZ] DNA polymerase LigD, ligase domain-containing protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pla:Plav_2977(845)31639.9770()0-- K01971  ligD  [tr:A7HXF1_PARL1] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> psin:CAK95_22200(899)32840.9770(431)0-- K01971  ligD  [tr:A0A1W6ZVW3_9RHIZ] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> gdj:Gdia_2239(856)31743.5769()7-- K01971  ligD  [tr:B5ZEK4_GLUDA] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> sphj:BSL82_05400(829)33341.7769(511)0-- K01971  ligD  [tr:A0A1L3ZT89_9SPHN] DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> aak:AA2016_6337(865)30243.7766(85)0-- K01971  ligD  [tr:A0A142MFW3_AMIAI] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> gdi:GDI0169(856)31643.4763()4-- K01971  ligD  [tr:A9H268_GLUDA] putative DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> agc:BSY240_2160(862)31442.4762(536)0-- K01971  ligD  [tr:A0A1B3NZS8_9RHIZ] ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rpd:RPD_2161(313)30045.7759(93)4-- K01971  ligD  [tr:Q138U3_RHOPS] ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rpt:Rpal_2316(313)30045.7759(90)4-- K01971  ligD  [tr:B3QDT3_RHOPT] DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> brc:BCCGELA001_30010(605)29740.7758(84)0-- K01971  ligD  [tr:A0A109QCF1_9BRAD] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rhz:RHPLAN_34800(859)31939.8758(104)0-- K01971  ligD  [tr:A0A127EUJ3_9RHIZ] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vpe:Varpa_2796(854)32740.4758(158)6-- K01971  ligD  [tr:E6V3W5_VARPE] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ccro:CMC5_051300(404)30744.6754(486)7-- K01971  ligD  [tr:A0A0K1EK48_CHOCO] ligD; DNA polymerase LigD, ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cti:RALTA_B0290(845)31042.6748(15)5-- K01971  ligD  [tr:B2AI89_CUPTR] Putative ATP dependent DNA ligase, eukaryotic type primase C-term domain; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> smk:Sinme_5055(628)29841.9748(55)3-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mop:Mesop_0815(853)29743.1742(101)9-- K01971  ligD  [tr:F7Y8Z8_MESOW] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hse:Hsero_2271(856)31740.7737(466)1-- K01971  ligD  [tr:D8IUA8_HERSS] ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hsz:ACP92_11350(856)31740.7737(466)0-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mlo:mll4606(829)29743.4736(106)11-- K01971  ligD  [tr:Q98DP8_RHILO] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mamo:A6B35_04445(841)31641.5734(69)0-- K01971  ligD  [tr:G6Y5E4_9RHIZ] DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mesw:A9K65_004035(837)29742.8734(71)0-- K01971  ligD  [tr:A0A1W6X1F3_9RHIZ] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bjp:RN69_20840(306)30840.3733(79)6-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bju:BJ6T_42920(306)30840.3733(79)9-- K01971  ligD  [tr:G7D3T3_BRAJP] hypothetical protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> skr:BRX40_17275(838)30439.5733(469)0-- K01971  ligD  [tr:A0A1L6JDL6_9SPHN] ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ghi:107941224(850)31240.7732(478)0--     [tr:A0A1U8MTV7_GOSHI] multifunctional non-homologous end joining protein LigD-like
> mci:Mesci_0783(837)29742.8732(89)6-- K01971  ligD  [tr:E8TFS2_MESCW] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bpt:Bpet3441(822)35739.5730()1-- K01971  ligD  [tr:A9HXI5_BORPD] unnamed protein product; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> miu:ABE85_05760(889)32139.6728(440)0-- K01971  ligD  [tr:A0A1A9HJF6_9BURK] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mam:Mesau_00823(846)29743.4726(28)4-- K01971  ligD  [tr:L0KDE8_MESAW] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nao:Y958_30480(852)32939.5725(22)0-- K01971  ligD ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> aaa:Acav_2693(936)32640.5724(469)28-- K01971  ligD  [tr:F0Q2F4_ACIAP] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mcg:GL4_0154(848)31042.3723()1-- K01971  ligD  [tr:A0A0A8K0U2_9RHIZ] ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mln:A9174_03965(829)29742.4723(110)0-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rgu:A4W93_03945(824)32439.8723(428)0-- K01971  ligD  [tr:A0A1W6L4B4_9BURK] ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cnc:CNE_BB1p08120(842)32041.3722(1)5-- K01971  ligD  [tr:F8GU22_CUPNN] ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> phl:KKY_1733(820)30141.2720(463)1-- K01971  ligD  [tr:G4RCU3_PELHB] ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bstg:WT74_19350(962)30743.0718()0-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> aav:Aave_2519(939)32941.0717(423)85-- K01971  ligD  [tr:A1TQ54_ACIAC] ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cbw:RR42_s3417(833)31238.5717(603)2-- K01971  ligD  [tr:A0A0C4YPL7_9BURK] ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pfv:Psefu_2816(852)31637.7713(497)4-- K01971  ligD  [tr:F6AI24_PSEF1] DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bja:blr8022(306)30739.1711(21)8-- K01971  ligD  [tr:Q89BX6_BRADU] DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mpt:Mpe_B0011(864)31235.9711(455)3-- K01971  ligD  [tr:A2SMK3_METPP] ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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