KEGG   COMPOUND: C00062Help
Entry
C00062                      Compound                               

Name
L-Arginine;
(S)-2-Amino-5-guanidinovaleric acid;
L-Arg
Formula
C6H14N4O2
Exact mass
174.1117
Mol weight
174.201
Structure
Mol fileKCF fileDB search
Remark
Same as: D02982
Reaction
Pathway
map00220  Arginine biosynthesis
map00261  Monobactam biosynthesis
map00330  Arginine and proline metabolism
map00331  Clavulanic acid biosynthesis
map00472  D-Arginine and D-ornithine metabolism
map00970  Aminoacyl-tRNA biosynthesis
map00998  Biosynthesis of secondary metabolites - other antibiotics
map01060  Biosynthesis of plant secondary metabolites
map01064  Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01130  Biosynthesis of antibiotics
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04150  mTOR signaling pathway
map04974  Protein digestion and absorption
map05014  Amyotrophic lateral sclerosis (ALS)
map05132  Salmonella infection
map05142  Chagas disease (American trypanosomiasis)
map05146  Amoebiasis
map05230  Central carbon metabolism in cancer
Module
M00029  Urea cycle
M00047  Creatine pathway
M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine
M00134  Polyamine biosynthesis, arginine => ornithine => putrescine
M00674  Clavaminate biosynthesis, arginine + glyceraldehyde-3P => clavaminate
M00736  Nocardicin A biosynthesis, L-pHPG + arginine + serine => nocardicin A
M00785  Cycloserine biosynthesis, arginine/serine => cycloserine
M00844  Arginine biosynthesis, ornithine => arginine
M00845  Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Enzyme
1.4.1.25        1.4.3.25        1.5.1.11        1.5.1.19        
1.13.12.1       1.14.11.41      1.14.13.39      1.14.14.47      
1.14.20.7       2.1.4.1         2.1.4.2         2.3.1.109       
2.5.1.66        2.6.1.84        2.7.3.3         3.2.2.19        
3.5.3.1         3.5.3.6         4.1.1.19        4.3.2.1         
5.1.1.9         6.1.1.19        6.3.2.11        6.3.2.24        
6.3.2.30        6.3.2.48
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00062  Arginine (Arg)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Arginine
    D02982  Arginine (USP/INN)
Pharmaceutical additives in Japan [BR:br08316]
 Stabilizing agent
  D02982  [003610] L-Arginine
 Solubilizing agent
  D02982  [003610] L-Arginine
 Buffering agent
  D02982  [003610] L-Arginine
 Solubilization agent
  D02982  [003610] L-Arginine
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D02982  L-Arginine
BRITE hierarchy
Other DBs
CAS: 74-79-3
PubChem: 3362
ChEBI: 16467
ChEMBL: CHEMBL1485
KNApSAcK: C00001340
PDB-CCD: ARG[PDBj] GND[PDBj]
3DMET: B01143
NIKKAJI: J9.182K
LinkDB All DBs
KCF data Show

ATOM        12
            1   C1b C    24.1085  -18.0306
            2   C1b C    25.3110  -18.7488
            3   C1c C    22.8766  -18.7137
            4   C1b C    26.5369  -18.0657
            5   C6a C    21.7324  -17.9664
            6   N1a N    22.9232  -20.1148
            7   N1b N    27.7453  -18.7779
            8   O6a O    20.5065  -18.6494
            9   O6a O    21.6856  -16.5596
            10  C2c C    28.9714  -18.1007
            11  N1a N    30.1739  -18.8129
            12  N2a N    28.9888  -16.6938
BOND        11
            1     1   2 1
            2     1   3 1
            3     2   4 1
            4     3   5 1
            5     3   6 1 #Down
            6     4   7 1
            7     5   8 1
            8     5   9 2
            9     7  10 1
            10   10  11 1
            11   10  12 2

» Japanese version

KEGG   COMPOUND: C00047Help
Entry
C00047                      Compound                               

Name
L-Lysine;
Lysine acid;
2,6-Diaminohexanoic acid
Formula
C6H14N2O2
Exact mass
146.1055
Mol weight
146.1876
Structure
Mol fileKCF fileDB search
Remark
Same as: D02304
Reaction
Pathway
map00300  Lysine biosynthesis
map00310  Lysine degradation
map00780  Biotin metabolism
map00960  Tropane, piperidine and pyridine alkaloid biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map01060  Biosynthesis of plant secondary metabolites
map01064  Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01120  Microbial metabolism in diverse environments
map01130  Biosynthesis of antibiotics
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04974  Protein digestion and absorption
Module
M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00030  Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine
M00031  Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine
M00032  Lysine degradation, lysine => saccharopine => acetoacetyl-CoA
M00525  Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526  Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Enzyme
1.4.1.15        1.4.1.18        1.4.3.14        1.4.3.20        
1.5.1.7         1.5.1.8         1.5.1.16        1.5.3.4         
1.13.12.2       1.14.13.59      1.14.20.-       2.1.3.8         
2.3.1.32        2.3.1.-         2.6.1.36        2.6.1.71        
2.6.1.105       3.4.13.4        3.4.14.13       3.5.1.12        
3.5.1.17        3.5.1.-         3.5.2.11        3.5.-.-         
4.1.1.18        4.1.1.20        4.3.1.28        4.3.2.8         
5.1.1.5         5.1.1.9         5.4.3.2         5.4.99.58       
6.1.1.6         6.3.2.7         6.3.2.11        6.3.2.20        
6.3.4.19
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00047  Lysine (Lys)
Anatomical Therapeutic Chemical (ATC) classification [BR:br08303]
 B BLOOD AND BLOOD FORMING ORGANS
  B05 BLOOD SUBSTITUTES AND PERFUSION SOLUTIONS
   B05X I.V. SOLUTION ADDITIVES
    B05XB Amino acids
     B05XB03 Lysine
      D02304  Lysine (USAN/INN)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   Lysine
    D02304  Lysine (USAN/INN)
BRITE hierarchy
Other DBs
CAS: 56-87-1
PubChem: 3349
ChEBI: 18019
ChEMBL: CHEMBL8085
KNApSAcK: C00001378
PDB-CCD: LYS[PDBj]
3DMET: B00013
NIKKAJI: J9.176F
LinkDB All DBs
KCF data Show

ATOM        10
            1   C1c C    29.3300  -16.8700
            2   C1b C    28.1400  -16.1700
            3   C6a C    30.5200  -16.1000
            4   N1a N    29.3300  -18.2700
            5   C1b C    26.9500  -16.8700
            6   O6a O    31.7100  -16.8000
            7   O6a O    30.5200  -14.7000
            8   C1b C    25.6900  -16.2400
            9   C1b C    24.5000  -16.9400
            10  N1a N    23.2400  -16.2400
BOND        9
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Up
            4     2   5 1
            5     3   6 1
            6     3   7 2
            7     5   8 1
            8     8   9 1
            9     9  10 1

» Japanese version

KEGG   COMPOUND: C16138Help
Entry
C16138                      Compound                               

Name
L-Pyrrolysine;
Pyrrolysine
Formula
C12H21N3O3
Exact mass
255.1583
Mol weight
255.3134
Structure
Mol fileKCF fileDB search
Reaction
Pathway
map00300  Lysine biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map01100  Metabolic pathways
map01120  Microbial metabolism in diverse environments
map04974  Protein digestion and absorption
Enzyme
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Other amino acids
    C16138  Pyrrolysine (Pyl)
BRITE hierarchy
Other DBs
CAS: 448235-52-7
PubChem: 47205448
ChEBI: 21860
PDB-CCD: PYL[PDBj]
NIKKAJI: J1.888.988I
LinkDB All DBs
KCF data Show

ATOM        18
            1   C1x C    16.5900  -28.4200
            2   C1y C    17.9900  -28.4200
            3   C1y C    18.4226  -27.0885
            4   N2x N    17.2900  -26.2656
            5   C2x C    16.1574  -27.0885
            6   C5a C    19.6224  -26.3900
            7   N1b N    20.8349  -27.0900
            8   C1b C    22.0473  -26.3900
            9   C1b C    23.2597  -27.0900
            10  C1b C    24.4722  -26.3900
            11  C1b C    25.6846  -27.0900
            12  C1c C    26.8970  -26.3900
            13  C6a C    28.1095  -27.0900
            14  O6a O    29.3219  -26.3900
            15  O5a O    19.6199  -24.9901
            16  N1a N    26.8970  -24.9901
            17  O6a O    28.1095  -28.4897
            18  C1a C    18.8129  -29.5526
BOND        18
            1     1   2 1
            2     2   3 1
            3     3   4 1
            4     4   5 2
            5     1   5 1
            6     3   6 1 #Up
            7     6   7 1
            8     7   8 1
            9     8   9 1
            10    9  10 1
            11   10  11 1
            12   11  12 1
            13   12  13 1
            14   13  14 1
            15    6  15 2
            16   12  16 1 #Down
            17   13  17 2
            18    2  18 1 #Down

» Japanese version

KEGG   COMPOUND: C00491Help
Entry
C00491                      Compound                               

Name
L-Cystine;
L-Dicysteine;
L-alpha-Diamino-beta-dithiolactic acid
Formula
C6H12N2O4S2
Exact mass
240.0238
Mol weight
240.3005
Structure
Mol fileKCF fileDB search
Remark
Same as: D03636
Reaction
Pathway
map00270  Cysteine and methionine metabolism
map01100  Metabolic pathways
map02010  ABC transporters
map04216  Ferroptosis
map04974  Protein digestion and absorption
Enzyme
1.8.1.6         1.8.4.3         1.8.4.4         4.4.1.1         
4.4.1.13        4.4.1.35
Brite
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   Cystine
    D03636  Cystine (USAN/INN)
Pharmaceutical additives in Japan [BR:br08316]
 Stabilizing agent
  D03636  [103758] L-Cystine
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D03636  L-Cystine
BRITE hierarchy
Other DBs
CAS: 56-89-3
PubChem: 3774
ChEBI: 16283
ChEMBL: CHEMBL590540
KNApSAcK: C00001352
3DMET: B01265
NIKKAJI: J9.172C
LinkDB All DBs
KCF data Show

ATOM        14
            1   C1c C    25.0113  -15.1902
            2   C1b C    23.7988  -15.8898
            3   C6a C    26.2238  -15.8898
            4   N1a N    25.0113  -13.7911
            5   S3a S    22.5862  -15.1902
            6   O6a O    27.4364  -15.1902
            7   O6a O    26.2238  -17.2889
            8   S3a S    21.3795  -15.8898
            9   C1b C    20.1612  -15.1902
            10  C1c C    18.9487  -15.8898
            11  C6a C    17.7362  -15.1902
            12  N1a N    18.9487  -17.2889
            13  O6a O    16.5179  -15.8898
            14  O6a O    17.7362  -13.7911
BOND        13
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Down
            4     2   5 1
            5     3   6 1
            6     3   7 2
            7     5   8 1
            8     8   9 1
            9     9  10 1
            10   10  11 1
            11   10  12 1 #Down
            12   11  13 1
            13   11  14 2

» Japanese version

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