KEGG   ORTHOLOGY: K18504
Entry
K18504            RNA       KO                                     

Name
arcZ
Definition
small regulatory RNA ArcZ
Pathway
ko02026  Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:ko00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02026 Biofilm formation - Escherichia coli
    K18504  arcZ; small regulatory RNA ArcZ
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis
    K18504  arcZ; small regulatory RNA ArcZ
  09184 RNA family
   03100 Non-coding RNAs
    K18504  arcZ; small regulatory RNA ArcZ
Messenger RNA biogenesis [BR:ko03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Bacterial Small RNA Regulators
     K18504  arcZ; small regulatory RNA ArcZ
Non-coding RNAs [BR:ko03100]
 Other RNA
  Unclassified
   K18504  arcZ; small regulatory RNA ArcZ
Genes
ECO: b4450(arcZ)
ECJ: JWR0254(ryhA)
ECD: ECDH10B_3384(ryhA)
EBW: BWG_4254(ryhA)
ECOK: ECMDS42_2678(ryhA)
ECF: ECH74115_4532
EOI: ECO111_ncRNA58(ryhA)
EOJ: ECO26_ncRNA58(ryhA)
EOH: ECO103_ncRNA60(ryhA)
ECK: EC55989miscRNA84(ryhA)
ECG: E2348C_ncR_58(ryhA)
ECR: ECIAI1_miscRNA_72(ryhA)
ECQ: ECED1_misc_RNA_74(ryhA)
EUM: ECUMN_misc_RNA_65(ryhA)
ECT: ECIAI39_miscRNA86(ryhA)
ECZ: ECS88_misc_RNA_72(ryhA)
EDJ: ECDH1ME8569_o0065(ryhA)
ELW: ECW_nc3482(ryhA)
ELF: LF82_s2075(ryhA)
EFE: EFER_misc_RNA_55(ryhA)
SEY: ArcZ(ArcZ)
SPT: SPA3195
SHB: SU5_nc136
SED: SeD_A3687
ESA: ESA_03602
CKO: CKO_04613
YPH: YPC_4266(ryhA)
SMAF: D781_4076
PATO: GZ59_03470
DDD: Dda3937_04681(ryhA)
PAM: PANA_ncRNA4(sraH)
 » show all
Reference
  Authors
Papenfort K, Said N, Welsink T, Lucchini S, Hinton JC, Vogel J
  Title
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA.
  Journal
Mol Microbiol 74:139-58 (2009)
DOI:10.1111/j.1365-2958.2009.06857.x
  Sequence
[eco:b4450]
LinkDB

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