KEGG   ORTHOLOGY: K18522
Entry
K18522            RNA       KO                                     

Name
omrA, rygA
Definition
small regulatory RNA OmrA
Pathway
ko02026  Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:ko00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02026 Biofilm formation - Escherichia coli
    K18522  omrA, rygA; small regulatory RNA OmrA
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis
    K18522  omrA, rygA; small regulatory RNA OmrA
  09184 RNA family
   03100 Non-coding RNAs
    K18522  omrA, rygA; small regulatory RNA OmrA
Messenger RNA biogenesis [BR:ko03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Bacterial Small RNA Regulators
     K18522  omrA, rygA; small regulatory RNA OmrA
Non-coding RNAs [BR:ko03100]
 Other RNA
  Unclassified
   K18522  omrA, rygA; small regulatory RNA OmrA
Genes
ECO: b4444(omrA)
ECJ: JWR0248(rygA)
ECD: ECDH10B_3007(rygA)
EBW: BWG_4245(omrA)
ECOK: ECMDS42_2343(rygA)
ECF: ECH74115_4104
EOI: ECO111_ncRNA47(omrA)
EOJ: ECO26_ncRNA47(omrA)
EOH: ECO103_ncRNA48(omrA)
ECK: EC55989miscRNA67(omrA)
ECG: E2348C_ncR_47(omrA)
ECR: ECIAI1_miscRNA_61(omrA)
ECQ: ECED1_misc_RNA_60(omrA)
EUM: ECUMN_misc_RNA_53(omrA)
ECT: ECIAI39_miscRNA73(omrA)
ECZ: ECS88_misc_RNA_60(omrA)
EDJ: ECDH1ME8569_o0054(rygA)
ELW: ECW_nc3080(omrA)
ELF: LF82_s1568(omrA)
EFE: EFER_misc_RNA_45(omrA)
SEY: OmrA(OmrA)
SHB: SU5_nc124
SED: SeD_A3339
CKO: CKO_04209
YPH: YPC_1030(omrB)
YEN: YEs034
SMAF: D781_3574
ECA: sraE(sraE)
PATO: GZ59_36700
DDD: Dda3937_04677(rygA)
PAM: PANA_ncRNA20(sraE)
 » show all
Reference
  Authors
Guillier M, Gottesman S
  Title
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs.
  Journal
Mol Microbiol 59:231-47 (2006)
DOI:10.1111/j.1365-2958.2005.04929.x
  Sequence
[eco:b4444]
LinkDB

KEGG   ORTHOLOGY: K18523
Entry
K18523            RNA       KO                                     

Name
omrB, rygB
Definition
small regulatory RNA OmrB
Pathway
ko02026  Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:ko00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02026 Biofilm formation - Escherichia coli
    K18523  omrB, rygB; small regulatory RNA OmrB
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis
    K18523  omrB, rygB; small regulatory RNA OmrB
  09184 RNA family
   03100 Non-coding RNAs
    K18523  omrB, rygB; small regulatory RNA OmrB
Messenger RNA biogenesis [BR:ko03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Bacterial Small RNA Regulators
     K18523  omrB, rygB; small regulatory RNA OmrB
Non-coding RNAs [BR:ko03100]
 Other RNA
  Unclassified
   K18523  omrB, rygB; small regulatory RNA OmrB
Genes
ECO: b4445(omrB)
ECJ: JWR0249(rygB)
ECD: ECDH10B_3008(rygB)
EBW: BWG_4246(omrB)
ECOK: ECMDS42_2344(rygB)
ECF: ECH74115_4105
EOI: ECO111_ncRNA48(omrB)
EOJ: ECO26_ncRNA48(omrB)
EOH: ECO103_ncRNA49(omrB)
ECK: EC55989miscRNA68(omrB)
ECG: E2348C_ncR_48(omrB)
ECR: ECIAI1_miscRNA_62(omrB)
ECQ: ECED1_misc_RNA_61(omrB)
EUM: ECUMN_misc_RNA_54(omrB)
ECT: ECIAI39_miscRNA74(omrB)
ECZ: ECS88_misc_RNA_61(omrB)
EDJ: ECDH1ME8569_o0055(rygB)
ELW: ECW_nc3081(omrB)
ELF: LF82_s1569(omrB)
EFE: EFER_misc_RNA_46(omrB)
SEY: OmrB(OmrB)
SHB: SU5_nc125
SED: SeD_A3341
ESA: ESA_00471
CKO: CKO_04210
EBF: D782_0881
ETA: etchr10005(SraE)
PAM: PANA_ncRNA19(sraE)
 » show all
Reference
  Authors
Guillier M, Gottesman S
  Title
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs.
  Journal
Mol Microbiol 59:231-47 (2006)
DOI:10.1111/j.1365-2958.2005.04929.x
  Sequence
[eco:b4445]
LinkDB

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