KEGG   Acidovorax avenae: Acav_2693Help
Entry
Acav_2693         CDS       T01445                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aaa  Acidovorax avenae
Pathway
aaa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aaa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Acav_2693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aaa03400]
    Acav_2693
Enzymes [BR:aaa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Acav_2693
DNA repair and recombination proteins [BR:aaa03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Acav_2693
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ADX46602
UniProt: F0Q2F4
LinkDB All DBs
Position
3039612..3042422
Genome map
AA seq 936 aa AA seqDB search
MARRSTASGTAQGAPQKAPQKAAPDALADYARKRDFRSTPEPGAEPGDALPRGALRFVVQ
KHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQY
GAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGRWTLVRMHGRGNERQPPWLLI
KERDGLERDAVEYSVVDAMPDSVKSLPDLPVPPPAHGRQARGPAPSGTRRTPARGKAPAS
AQSLETTSGRTIRAGTSRRPKKAPLPAALAPQLATLVDGPPTGLAEWMFELKFDGYRILA
RIEGSEVRLITRNGNDWTHRMPGLARAVRALPVESGWIDGEIVVPDRNGIPDFQALQNAF
ESGRRPGSSAAGTPDGGAVDRSGLVFYVFDLPFLNGHDLRGLPLAERREALRTLVAEAGS
DTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYMSGRSADWIKLKCGQRQEFVIGG
YTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLATLHAQLRSLATDRSPFAEG
TQVGRKAHWVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAAAVAGT
PSTPPAAPRRASSDATPSRARSTMTSRRTASAPSPAAPTSSLRVTHGDRVIDAASGTTKL
ELVRYYALVAPLMMEHLLQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALDPGH
PPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRIAFDLDPGEGVPWDKVQEAATL
MRVMLTELGLPGFLKTSGGKGLHVVVPIKRLHGWDAVKGFSQAVVQHMARTIPQLFVAKS
GPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVATVE
ERLREGNASWEGYDKAAVSITQAMKMLGYEAPRGGR
NT seq 2811 nt NT seq  +upstreamnt  +downstreamnt
atggcacgacgctccacagcctccggcactgcgcagggcgcaccgcaaaaagcgccgcaa
aaggcggcaccggatgccctcgcggactacgcccgcaagcgcgatttccgcagcaccccc
gagcccggagcggagccgggcgacgccctgccgcgcggcgcgctgcgcttcgtggtgcag
aagcactgggcgagccgcctgcattacgacttccggctggaaatcgacggcaccatgaag
agctgggcggtgcccaagggcccgagcttcgaccccagggacaagcgcatggccgtgcag
gtggaggaccacccggtcgcctacaaccgcttcgaaggccagatccctgcgcggcagtac
ggagcgggccgcgtcatcatctgggacaagggctactgggtgccgctggaagaccccgcc
cgtgcgtggcgcgcgggcaagctcaagttcgaattgcacggccacaagctccagggtcgg
tggacgctggtgcgcatgcacggccggggcaacgagcgccagccgccgtggctgctcatc
aaggagcgcgacgggctggaacgcgacgccgtcgagtacagcgtggtggacgccatgccg
gacagcgtgaagtcgctgcctgacctgcctgtgcccccgcccgcgcacggcaggcaggcc
cgcggccctgccccatccggcacccgccggacgcccgcccgcggcaaggctccggcttcc
gcgcagtccctggagacgacttcaggccggacgattcgggccggtacttcccggcgcccc
aagaaggccccgctgcccgcggcactggcgccgcaactggccacgctggtggatggcccg
cccaccggcctggccgaatggatgttcgagctcaaattcgacggctaccgcatcctcgcg
cgcatcgagggcagcgaggtgcgcctcatcacccgcaacggcaacgactggacccaccgc
atgcccgggctggcgcgcgccgtgcgcgcgctgccggtggagtccggctggatcgacggc
gagatcgtggtgcccgaccggaatggcatccccgatttccaggcgctgcagaatgctttc
gagagcgggcgccggcctggaagcagcgcggcgggcaccccggacggcggcgcggtggac
cgcagcggcctggtcttctacgtgttcgacctgcccttcctcaatggccacgacctgcgg
ggcctgccgctggcggagcgcagggaggctctgcgcacgctcgtggccgaggcgggcagc
gacaccgtgcgcttcagcgacgcgttcgaggcgtcgcccggcgaattgatcgcctccgcc
tgccggctcggcttcgagggcgtgatcggcaagcgcgtgtcatcggcctatatgtccggc
cggtcggccgactggatcaagctcaagtgcggacagcggcaggagttcgtgatcggcggc
tatacggacccgcagggcacgcgcaccggcctcggctcgctgctgctcggcgtgcacggc
gacgacggacagctgcactatgcgggcaacgtaggctccggcttcagcgagcgcaccctg
gcgacactgcacgcgcagctgcgctcgctggccacagaccgcagccccttcgccgaaggc
acgcaggtgggccgcaaggcgcactgggtcaagccgcaactgctggcggaggtggccttc
gcgggctggacgcagacgcgccatgtccgccaggcggtcttccgcggcttgcgcgaggac
aagcctccgcgcgagatcgtgcgcgagacgcccgcaccggccgccgcggtggcgggcacg
ccgtccaccccgccggcggccccgcgccgtgcttcatccgacgccacgccctccagggca
cgctccaccatgacctcccgccgaaccgcatccgctccttcgccggccgccccgacctcc
tcgctgcgcgtgacccacggcgaccgcgtgatcgatgccgcgagcgggaccaccaagctg
gagctggtgcgctactacgccctggtcgcgcccctgatgatggaacacctgctccagcgc
cccgtctcggtcgtgcgggctccggaaggcgtgggtggggaactcttcttccagaagcat
ccggagcacggctcggtggacggcgtgcgcacgctggatccggcgctggatcccggccat
ccgcccctggccgagatcgcggggcccgaaggcctgcctgcctgggcgcagatgaacacc
atcgagttccacagctggaacgcccgcagcgaccgcatcgaccggcccgaccggatcgcc
tttgacctcgaccccggcgaaggcgtgccctgggacaaggtgcaggaggccgccacgctg
atgcgcgtgatgctcacggaactgggactgccgggctttctcaagaccagcggcggcaag
gggctgcacgtggtcgtgcccatcaagcgcctgcacggctgggatgcggtgaagggcttt
tcgcaggcggtggtgcagcacatggcgcgcaccatcccgcagctgttcgtggccaagagc
gggccgcgcaatcgcgtggggaaaatcttcgtggattacctgcgcaacggcttcggcgcc
accacggtgagcgcatggtccgcacgcgcccggcccggcctgggcatttccgtgccgctg
cgctgggatgaactgggcgcgctctccagcagcaccgaatggaccgtggccaccgtggaa
gagcggctgcgcgaaggcaacgcgtcctgggagggctacgacaaggcggccgtctccatc
acgcaggcgatgaagatgctcgggtacgaggcgccgcgcggcgggcgctga

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