Aedes aegypti (yellow fever mosquito): 5575101
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Entry
5575101 CDS
T01053
Name
(RefSeq) uncharacterized protein LOC5575101 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aag
Aedes aegypti (yellow fever mosquito)
Pathway
aag03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aag00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
5575101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aag03021
]
5575101
03019 Messenger RNA biogenesis [BR:
aag03019
]
5575101
Transcription machinery [BR:
aag03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
5575101
Messenger RNA biogenesis [BR:
aag03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
5575101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
5575101
NCBI-ProteinID:
XP_021705926
LinkDB
All DBs
Position
3:21907200..21940707
Genome browser
AA seq
1917 aa
AA seq
DB search
MAATMDQAAVQRRSKEIETEYLSSLADLNVNSKPLINMLTILAEENLDYAPIIVNAVEKH
LAKVQPEFKLPILYLVDSIVKNVGKQYQQLFSQVIVNMFCGVFETVNEKVREKMFSLRQT
WNEVFPQSKLYALDIKINSIDPGWPITAQLKTPKSPAIHVNPMFLKNQQIPEPNLDMQQQ
LRDKQRELLELQAKKLELELIATKKRIEEQEKLLVAQTASVTKEPVPDLKRPATVIGSNH
VPPPRGRIAPPNAAMINLAKSRDPRLARQQAQLAAQMVAASTNSTPTMVGGTQIPPHNPI
VLDQSGKPVSIRERLGRIPKRTDPRIKPSGTDVDRRKPSSTATSSSVNNSSSPSHKSRSE
NDASKKREKKDELSPKSARSSSSKPSSSDKKKLSADALSPKSSSPLKKKTSSLSEKSPSR
SEKTSPKSREGKVSKGNKSSTRRPGDIAKNSEDSSVSPSSSSENLMPVANESKDVDLRLL
IPEKKLKLEQQQPPQHPQAKLVSKPLPDQKKALGEAVDADNVPSALAAVSRDVDLRIPPP
GLLKDVSDSVVVSSTAGLPIVAPVTGIESGPSIDSMPAVTTAARAGSPSETAVKKRPSNH
KLEEPVNKKPKSEKIDGLFGSEDVDLRKLAGPMHPIEPLPPPPPIISEATRPTLQDTPQV
ESLEKQLGAPSSKAALEAVRAKIAEATKNKDRDKLGRPLLYNKLSDDPVERRRSLNQPKA
MDVDLRQQQPQFPPADPFGEDNSQDGMNANIKTIVAQAQEQMEKGEITPEQYNILMKQVI
QLNETQKIRQAQRMEMMKRQQIIGPMLPDDNANSHSGEEMASFSPNINDDGGVKPNVPAI
AGGGPVVSNDFRGKITPVDTTSSKVEPQFGNSGPIGDIRIRDPRRPTDVRFNPQWGIRGP
MPGPNAMPGVVGPPMMNQRLPGPMLNPWDQTPFAKMNQNVVPPPPMAPRFPPVPLNNGPQ
SNMLMPGVPKQNESVRTINIDGIQREIRFYDDIAVIFMSWDEPKEIGFQKGSRMVVVDDR
DSFELSFNECYKAITIEGKVYQMKLGAPTRELYIDDRWYECYFGDPPTNIVLDGINRVFK
ISGPAPQVKIGNSRNDLVAGKINMIVNAEIIIPVFLDSQIQTFEIYGQMHRLQFADFLLT
VIIDDQPFLVEYGGLPKVFKLRGKDFYIRFTAVPKVVVPGRVYIRDMIRTPLHRDLRTPP
RDQNLLIPFVQPMNSMMSSMAASSAVPSLFPAGASMQPKHSATVHPTATGLDYLTNLMPH
STPHSNVSNNLAGYQIQAEDKPLAPPVAAAPAKPASGGLNLPILQNLNIDELYAKIVAAG
IIGKTTTTTATTAPSTSTSTTSSTASKLEKALEEEIEDIEPVYLNKPETLKRRQSAIVAQ
LFLGMQCSSCGVRFPPEQTMKYSQHLDWHFRQNRRDRDSARKAHSRKWYYDVSDWIQYEE
IEDLEEREKNWFEAQQTEQLEFNGDGETGSGRPGAETPPPSCPAGSDEASKRCHMCHDEF
QQFYNEETEEWHLKNAIRVEECTYHPLCYEDYKASLTLDETAMNATNEEGDESKTDDDVK
VKQEAISDADDTVKEITIDDDDDVIVLPPSEEVVTEIPDDDDIETVDSHSTADDTRGATS
SVTAVDDDSSKPSTEAAQSSEPPAPKIIETRIDDDIAIQEPTIERIDVNDLDDSDAHMSA
AAPAITDECSQMSVKVKEEPKDDDEDDVDEEDELFEDVGTIESSMVENVKEADTVDLEAI
DSPPSPPLESTSQAQLKPSIDGNVEMQDNLTTGVITNRIKINITKAKTTTAATTGSTTTN
SSYSTTGGGSSIAVLISGGGGSGAVASYDNCNDDLLYGNLDDIHGGHHDSNSSSMMVKMH
EDEELEQDANNKGPVPPTNEETTDIDYDLKPSLRGIIFTRQPRVENGFETSGLCSIM
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacaatggaccaggcagccgtgcagcggcggtccaaggaaatcgaaacggaa
tacctgtccagtctggccgatctgaacgtcaacagcaagccgctgatcaacatgctgacg
attctggctgaggagaatctggactacgctccgatcatcgtgaatgccgtcgagaagcat
ctggctaaggtgcagccagaattcaagttacctatcctgtacctggttgattccatcgtg
aagaacgttggcaaacaatatcagcaactgttcagtcaggttattgtaaatatgttctgc
ggtgttttcgaaacggtgaatgagaaagttcgtgaaaagatgttcagtctacggcagaca
tggaatgaagtgtttccacagtccaagctgtacgctctggacatcaagatcaactcgatc
gatcccggatggccgatcaccgcacagttgaaaacgccgaaatctccagccatccacgtt
aatcctatgttccttaagaatcagcagatacctgaaccaaatcttgatatgcaacaacag
cttcgcgataaacaacgtgaactattggagcttcaggccaaaaagctcgaactggagctt
atagctacgaaaaagcgtatcgaagagcaggaaaagttgttggttgcccaaacggcaagt
gtaactaaagagcccgttcctgatctgaagcgtcctgctactgtgatcggttcgaatcat
gttccgccacctcggggccgtattgctccaccgaatgcggcgatgatcaacctagctaaa
tcccgtgatcctcggttagcacgacaacaggcacaacttgcagcacaaatggtagcggcc
agcaccaattcaacaccaacgatggttggaggtacccagattcctccacataatccgatc
gttctcgatcagtccggtaaaccagtcagcattagggaacgtttgggaaggatacccaaa
cggaccgatccacgtatcaaacctagtggaaccgacgttgatcgtaggaaaccttctagt
accgctacgagtagcagtgttaacaattcgtcatcgccatcacacaaatctcggagtgag
aacgacgcttccaagaagcgcgagaagaaggatgagttgtcaccaaaatcggccagaagc
tcttcttcaaagccatcatcgtcggataaaaagaaactatcggccgatgctttatccccg
aagagcagttctcctcttaagaagaagacttcatccctttcggaaaagtctccttctcgg
agcgagaaaacttctcccaaatcgcgagaaggtaaagtaagtaaaggaaacaaatcctct
actcgacgtcctggagacattgcaaagaattccgaggattcctccgtttcaccatcgtcc
agcagcgaaaatctgatgcccgttgccaacgagtccaaggatgtggatctacgacttttg
ataccagagaaaaagcttaaactggagcagcagcaacccccgcagcatcctcaggcaaaa
ttagttagcaaaccactaccagatcaaaagaaagccttgggagaagcagttgatgcagac
aacgtaccttcagcactggcagccgtgtccagggacgtcgatcttcgcattccacccccc
ggtcttctgaaggatgtttccgacagcgttgtggtatcttcgacggcgggattgcccatt
gtggctccggttaccggcattgagtcggggccgagcatcgacagtatgccagcagtaacg
acagctgccagagcaggttcaccatcggagacggcagtcaagaagcggccaagtaatcac
aagctggaagaaccagtgaacaagaaacccaagtcggagaaaatcgatggattgttcggt
agcgaagatgttgacctgaggaagttagcaggaccgatgcatcctatcgaacctcttcca
ccgccaccaccaatcatttcggaagcaacgcgaccgaccttacaggacacacctcaggtt
gaatctctggagaaacaacttggtgctccttcgtctaaagcagctcttgaagcggttcga
gccaagatagccgaggccacgaagaacaaggatcgtgataagctgggacggcccttattg
tacaataaactatcagatgatcctgttgaacggcgtcgctcgttaaatcagcccaaagcg
atggacgtggatctgcgtcagcagcaaccccaattccctccagcggatccgtttggcgaa
gataactcccaggatggaatgaatgccaacatcaaaacgattgtcgcccaagcacaagag
cagatggagaagggcgaaatcactccggagcagtacaacatactgatgaagcaagtaatt
cagctgaacgagacccaaaagattcggcaggctcaacgcatggaaatgatgaagcgacag
caaataatagggccaatgctgccggatgataatgccaattcgcacagcggcgaagaaatg
gcgagcttcagtcccaacattaacgacgacggtggggtgaagccgaatgttcccgcaatt
gctggtggtggtcctgttgtgagcaacgattttcgtggaaaaattaccccggtagatacg
acgagctccaaggtagagccccagtttggtaacagtggtccgattggcgacatcaggata
agagatccacgtcgtccgactgatgtccgattcaatccacagtggggcatccggggacct
atgcctggtccaaatgccatgccaggagttgtgggtccaccaatgatgaaccaaagactg
ccggggcctatgttgaacccatgggatcagactccattcgcgaaaatgaatcaaaatgtg
gttccaccaccaccgatggcacctcgtttcccaccagttccattgaataatggaccccag
tccaacatgctcatgcctggagtccccaagcagaatgaaagcgtgagaaccatcaatatc
gatggtattcaaagggaaatccgtttctacgatgatatcgctgtaatttttatgagctgg
gacgaaccgaaagaaatcggtttccagaaaggctcccgaatggttgttgtcgatgatcga
gattccttcgagcttagtttcaacgagtgctacaaagccatcaccattgagggcaaggtc
taccaaatgaagttgggtgctcccaccagggaattgtacatagatgatcgatggtatgag
tgctactttggggatccgccgacgaacatcgtattggatggaatcaatcgagtgttcaaa
atcagtggcccggctccacaggtgaagatcggcaacagccgtaatgatctagtcgctggt
aaaatcaatatgatcgttaatgcagagatcatcattccggtatttcttgactcccaaatt
caaacctttgaaatatacggtcaaatgcacagactacagtttgctgatttcctactaacg
gtaataatcgatgatcagcccttcctcgtggaatacggtggtctgcctaaggtgttcaag
cttagagggaaggatttctatatacggtttaccgctgtaccaaaagttgtcgttcccgga
cgcgtctacattagggatatgattcgaactccacttcatcgcgatctgcgaacacctcca
agagaccaaaacctcctgatcccgttcgttcaaccaatgaacagtatgatgtcttcaatg
gctgcatcttctgctgtgccttcgttgttcccagcaggagctagtatgcaaccgaagcac
tccgctaccgttcatcccactgccactggtttggattacctcaccaatctgatgccgcat
tcgacgccgcactcaaacgtttcaaacaatttggccggttaccaaattcaagccgaagat
aaaccgctcgcaccacctgtagcagcagctccagcaaaacccgcctccggtgggttgaac
ttgccaattctccagaatctcaacatcgacgaactctacgccaagatcgttgctgccggt
attattggcaaaactacaactaccactgctacgaccgctccgtccacctctaccagcacc
acttcatcaactgcctctaaactggagaaagccctcgaagaagaaatcgaggacattgaa
ccggtatacctcaacaaaccagaaacgttgaaacggcgtcaatcagcaatcgttgcgcag
ctgttcctcggaatgcaatgcagcagttgcggcgttcgattcccaccggagcaaaccatg
aagtacagccaacacttggactggcacttccggcagaatcgccgcgatcgggactcggct
cggaaggctcactcgcgcaagtggtactacgacgtgtccgattggatccagtacgaggag
atcgaggacctggaggaacgggaaaagaattggttcgaagcgcaacaaaccgaacagctg
gagttcaatggtgatggggaaacgggaagcggtcgacccggggcagaaacgcccccgcca
agctgtccggctggttcggacgaagcgagcaaacggtgccacatgtgccatgacgaattc
caacagttctacaacgaagaaacggaagagtggcacctgaagaatgcgatacgcgtcgag
gaatgcacgtatcacccgctgtgctacgaagactacaaggcatcgctaacgttggacgaa
acggccatgaatgcgaccaacgaggagggagacgaaagcaagactgatgacgacgtgaag
gtgaagcaggaggcgatcagcgacgctgacgataccgtgaaggaaatcaccatcgatgac
gatgacgacgtaattgttctgccaccatccgaagaagtcgtaacggaaattccggacgac
gacgacatcgaaacggtggattcgcattcgacggcggacgatacccgaggagccacatct
tccgtgactgcggtcgacgacgatagtagtaaaccgtcaaccgaggcagcccaaagctcc
gaaccgccggcaccgaagatcatcgaaacgcgaatcgatgacgacatcgccatccaagag
cccaccatcgaacggatcgacgtgaacgatctggacgacagcgatgcccacatgagtgcg
gcggccccggcgataacggacgaatgttcccaaatgtcggtcaaggtgaaggaagaaccg
aaagacgacgacgaggacgacgtggatgaagaggacgagctgttcgaggatgtaggaact
atcgagtcctcgatggtggagaacgtaaaggaagcagacacggttgacctggaagcgatc
gattcgccaccgtcgcctccactggagagcaccagtcaggcccagctgaagccctcgatc
gatggcaacgtcgagatgcaggataacctcacgaccggtgtcatcacgaaccgaatcaaa
atcaatatcacaaaggcaaagaccacaacggcggccacaaccggtagcaccactacgaac
agcagctacagcacgaccggcggtggatcgagcattgccgtgctgatcagtggcggaggc
ggaagcggagcggtggccagttacgacaactgcaacgacgatctgctctacggtaatctc
gatgacatccacggcggccaccacgacagcaacagcagcagtatgatggtaaagatgcat
gaagatgaagaattagaacaagatgctaataataaaggaccggtcccgccgaccaatgaa
gaaacgactgatattgattatgacttgaagccgagtctgcggggcattatattcacccgg
cagcctcgcgtcgagaacgggttcgaaacgtccggtctctgttccattatgtaa
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integrated database retrieval system
