Aminobacter aminovorans: AA2016_6337
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Entry
AA2016_6337 CDS
T04343
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aak
Aminobacter aminovorans
Pathway
aak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AA2016_6337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aak03400
]
AA2016_6337
Enzymes [BR:
aak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AA2016_6337
DNA repair and recombination proteins [BR:
aak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AA2016_6337
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMS45233
LinkDB
All DBs
Position
pAA02:368434..371031
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AA seq
865 aa
AA seq
DB search
MALETYRKKRNFGATPEPKGRQGRRRGNSFVVQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLSPVDKRLAVHVEDHPLAYGDFEGTIPKGEYGGGTVIVWDRGSWTPIGDGADGYAKGQ
LDFELDGEKLHGRWHLVRMRGKPREKRENWLLIKGDDKFARDNGEDVLDELPLSVKTGRD
LAEVSGEAPGWSSKTGRIRGPKTLQHKATARKTGARKTGAQKSGTRISGAPGKAAHEAPT
AALADMPKARKAALPAFVEPALATLAASPPTGERWLHEIKFDGYRLQARLEDGDVFLLTR
SGLDWTAKFGKAVVDALAALPVTTALIDGELVVETGTGASDFSALQADLSAGRTDRFVFY
AFDLLHLEGYDLTQSPLSARKTRLEQLIPEGNGMVRYSGHFEERGSLVLRHACRLSLEGV
VSKLRDGPYRSGRCKSWIKSKCSARQEFVVAGFIPSSVSRKAIGSLILGVFDGKELHHVG
RVGTGFTEAVARQLFERLHRLEIATSPFAGRLSADERRQARFVRPELVAEVEFRAWTADG
HLRHASFRGLREDKPATEIVREIRKSGAKPPPPQRRTVKLTHPDRLYWPDEGVTKEGLAD
YYTDVWRHMAPFVVGRPLALLRCPNGITGEKFFQKHAWKGLNPNIVLIEDPKEKTGAPLI
SINDLDGLLGLVQSATLEIHPWGSTAADWEHPDMIVMDLDPGDDVSWQAVTAAAEEVRQR
LVDKGLAAFLKTSGGKGLHVVAPLKPKADWPEVKAFTKALADEMASDDPDRYVSTITKSK
RHGKILVDYLRNQRGATAVACYSTRARPGAAVSAPLSWDELGADIGPAHFTVENMPKRLE
ALASDPWEDFRAAAVPLTAKRGKAG
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaaacctatcgcaaaaagcggaatttcggcgccacgcccgaaccgaagggg
cggcaggggcgccgcagaggcaacagcttcgtcgtccagaaacatgatgccacacgcctg
cattacgatttccggctggagatggatggtgtgctgaaaagctgggcggtcaccaaggga
cccagcctgtcgcccgtcgacaagcggctggcggtgcatgtcgaggaccatccactcgct
tatggcgatttcgaagggacgatcccgaaaggcgaatatggcggcggcaccgtgatcgtc
tgggaccgcggcagctggacgccgatcggcgacggcgcggacggctatgccaaggggcag
ctcgatttcgaactcgacggcgagaagctgcacggccgctggcatctggtgcgcatgcgc
ggaaaaccgcgcgagaagcgggaaaactggctgctgatcaagggcgacgataaatttgcc
cgcgacaatggcgaggacgtgctggacgagctgccgctgtcggtgaagacagggcgggac
ttggcggaggtctcaggcgaagctcccggctggtcgtcgaagaccgggcgcatccgtggc
cccaagaccctgcagcacaaggcaacagcacggaagactggggcacggaagactggggcc
cagaagtcggggacgcggatttcgggggcgcccggcaaggccgcgcatgaggcgccaacc
gcagcacttgccgacatgccgaaagccagaaaggcagcccttcctgccttcgtcgagccg
gctcttgcaacccttgcggcgtcgccgccgacaggcgagcgctggctacacgaaatcaag
ttcgacggttaccgcctgcaggcgcggcttgaagatggcgatgtcttcctgttgacgcgc
agcgggctcgactggacggccaaattcggcaaggcggtcgtcgacgcgctcgcagcgctg
cccgtcaccacggcactcatcgacggcgaactggtcgtcgagacgggcacgggcgcgtct
gacttctccgccctgcaggccgacctgagcgcgggccggacggatcgcttcgtcttctat
gccttcgacctgctccatcttgagggatatgacctcacccagtcgccgctctcggcacgc
aagacacggctcgagcagcttattcccgagggcaacggcatggttcgttacagcggccat
ttcgaggaacgcggcagccttgtgctgcggcacgcctgccgcctcagcctcgagggcgtg
gtgtcgaagctgcgcgatgggccctatcgcagcgggcgctgcaagtcctggatcaagtcg
aaatgctcggcgcgccaggagttcgtcgtcgccggcttcataccctccagcgtgtcgcgc
aaggccatcggctcgctcatcctcggcgtgttcgacggcaaggagcttcaccatgtcggc
cgtgtcgggaccggtttcaccgaagccgtggcaaggcagctctttgagaggctccatcgc
ttggagattgcgaccagcccatttgccggacgcctgtcggccgacgaaaggcgccaggcc
cggtttgtccggcccgagctggtggcggaagtggagttcagggcgtggaccgcggatggc
cacctgcgccacgcctcgtttcgcggcctgcgggaagacaagccggccacggaaatcgtc
cgcgaaatcagaaagtccggcgcaaagcctccgccgccgcaacgccgcaccgtcaaactc
acccatcccgaccgcctctactggcccgatgagggcgtgaccaaggaggggctggcggac
tattataccgatgtgtggcgccacatggcgccgtttgttgtcggccggccgctggcgctg
ctgcgctgcccgaacggcataacaggcgaaaaattcttccagaagcatgcctggaaaggg
ttgaacccgaacatcgtgctgatcgaggaccccaaggaaaaaaccggggcgccgctgatc
agcatcaacgacctcgatggcctgctcggcctggttcagtcggcgacgctggaaattcat
ccctggggctcgacagcagcggattgggaacatcccgacatgatcgtcatggatctcgat
ccgggagacgacgtctcctggcaggccgtcaccgcagcggccgaggaagtgcggcagcgg
ctggtcgacaaggggcttgccgccttcctgaagacgtcggggggcaagggcctgcatgtc
gtggcgccgctgaagccgaaagccgactggcccgaggtcaaggccttcaccaaggcgctt
gccgacgagatggcatcagatgatccggaccgctacgtctcgacgatcaccaagtcgaag
cgccacggcaagatcctcgtcgactatctgcgcaaccagcgcggcgcaaccgccgtcgcc
tgctactcgacccgggcccgcccgggtgctgcggtgtcggcgccgctgtcatgggatgag
ctcggcgcagacatcggaccggcccacttcaccgtcgagaacatgccgaagcgcctcgaa
gccctggccagcgacccctgggaggatttccgcgccgccgccgttccgcttacagcgaaa
cgcggaaaggccggctag
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