Aeromonas allosaccharophila: I6G90_17415
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Entry
I6G90_17415 CDS
T07074
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aall
Aeromonas allosaccharophila
Pathway
aall03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aall00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6G90_17415 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aall03021
]
I6G90_17415 (rpoC)
03400 DNA repair and recombination proteins [BR:
aall03400
]
I6G90_17415 (rpoC)
Enzymes [BR:
aall01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6G90_17415 (rpoC)
Transcription machinery [BR:
aall03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6G90_17415 (rpoC)
DNA repair and recombination proteins [BR:
aall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6G90_17415 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QPR54187
UniProt:
A0A0T6U814
LinkDB
All DBs
Position
3803826..3808130
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVIEPGMTNLERSQMLSEEQYLDALEEWGDEFDAKM
GAEAILALLRAIDLEGEVKTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLAGPKEAEKVYRAG
LADLHARVKVRITEYLRQEDGSLREHTEMKNTTVGRAILSLILPKGMEYALIDEPKVLTA
AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL
SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS
KAMMENLSKERNVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI
IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC
GTTEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEVLVARNTLLDEQLCDLLE
QNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR
TFHIGGAASRAAAENSIQVKNTGTIKLQNAKFVHNSDDKLVITSRSTELTIMDDMGRTKE
SHKLPYGSVLEVKDGQAVNAGETVANWDPHTHPIITEVAGRLQFEHMIDGVTITRQTDEL
TGLSSIVVLDVNERPSAGKEMRPTVKLVDLNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA
NVGVGDAVARIPQESGGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR
RLVITPTDGGNVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI
ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV
AEGKTPATFRHVLMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV
GRLIPAGTGFAYHHSRINQRAAAARAVGTPQVTADEAQQNLADLLNAAGSFDEE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaggctcagaccaagaccgaagagtttgacagtatc
aagatcggtctggcctctcctgacatgatccgctcctggtcattcggtgaggtcaaaaag
cctgagaccatcaactaccggactttcaagccggaacgtgatggtctgttctgcgcccgc
atcttcggaccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaggtccgtcgtgag
cgtatgggccacatcgagctggccagcccgactgcccacatctggttcctgaagtccctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgcgacatcgagcgcgtgctttac
ttcgaatctttcgtggtaatcgagccgggcatgaccaacctcgaacgcagccagatgctc
tctgaagagcagtacctggatgcgctggaagagtggggcgacgaatttgacgccaagatg
ggtgccgaagcaatcctggcattgctgcgcgccatcgatctggaaggtgaagtcaaaacc
atgcgcgaggagctggatcaaaccaactccgagaccaagcgcaagaagaccaccaagcgt
ctgaagctgatggaagctttcctgcagtccggcaacaagccggagtggatgatcatgaca
gtgctgcctgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacttccgatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgcttgaag
cgtctgctggatctggctgctccggacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gagtccgtcgatgcgctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aagcgcccgctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcaa
aacctgctgggtaagcgtgtcgactactccggtcgttccgttatcaccgtaggcccgacc
ctgcgcctgcatcagtgcggtctgccgaagaaaatggcgctggaactgttcaagccgttc
atctatggcaagctggaaacccgcggtctggcgaccacgatcaaggccgccaagaagatg
gtggagcgcgaggaagctgtcgtttgggatatcctggacgaagtgatccgcgagcacccg
gtgctgctgaaccgtgcaccgaccctgcaccgtctgggtatccaggcattcgaaccgacg
ctggtcgaaggcaaggcaatccagctgcacccgctggtttgtgctgcgtataacgcggac
ttcgatggtgaccagatggcggtccacgtaccgctgactctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcgcctgcctccggtgagccgatcatc
gttccttctcaggacgtggtcttgggtctgtactacatgacccgtgcccgtatcaacgcc
aaaggcgaaggtatggtgctggccggcccgaaagaagccgagaaagtatatcgcgccggt
ctggccgatctgcatgctcgtgtgaaagtgcgcattaccgaatacctgcgtcaggaagac
ggttctctgcgtgaacacaccgagatgaagaacaccaccgttggtcgtgcgatcctgagc
ctgatcctgccgaaaggcatggaatacgccctgatcgacgagccgaaggtgctgactgct
gcagagcaggctgacctggatgccaatccgcagaactggatcaaatccgtatccaacaag
gcgctgggcaaaaagctcatctcccgtctgctgaacacctgctatcgcaagcagggcctg
aaggacaccgttatcttcgctgaccagctgatgtataccggtttccactatgcggccctg
tccggtgcttccgttggtatcgatgacatggtcatcccggatgccaagaaagacatcatt
gcggcagccgaagccgaagttgccgagatccaggaccagttcctgtccggtctggtgact
gcgggcgaacgttacaacaaggttatcgatatctgggccagcgccaacgagcgcgtctcc
aaggccatgatggagaacttgtccaaagagcgtaacgtcaactcgctgggtgaagaagaa
gagcaggcatcgttcaacagcatctttatgatggccgactctggtgcgcgtggttccgcc
gcccagatccgtcagctggccggtatgcgtggcctgatggccaagccggatggctccatc
atcgagacgccgatcgtcgcgaacttccgcgaaggtctgaacgtattgcagtactttatc
tccactcacggtgctcgtaagggtctggcggataccgcactgaagactgcgaactccggt
tacctgactcgtcgtctggtagacgtggcacaagacatggtgatcaccgaggacgattgc
ggcactaccgaaggtctgtggatgactccgctgatcgaaggtggcgacgttgtcgaaccg
ctgcgtgagcgcgtgctgggccgtgtggttgccgatgacgtgatcaagccgggtactgaa
gatgaggtgctggtagcacgtaacaccctgctcgacgagcagctgtgtgacctgctggag
caaaactctgttgaccgcgtgaaggtacgttctgccatcacctgtgaaactgacttcggt
aactgtgctcactgctacggccgtgatctggcccgtggccacctggttaacaaaggtgag
gctgtcggtgttatcgccgcccagtccatcggtgagccgggtacccagctgacaatgcgt
acgttccacatcggtggtgcggcatcccgtgctgctgccgagaacagcatccaggtcaag
aacaccggtaccatcaagctgcagaacgccaagttcgttcacaacagcgatgacaaactg
gttatcacctcccgttctaccgaactgaccatcatggacgacatgggccgtaccaaggaa
agccacaagctgccttacggttccgtgctggaagtgaaggacggccaggctgtgaacgct
ggcgagaccgttgccaactgggatccgcacacccacccgatcatcaccgaagtggcaggt
cgcctgcagttcgaacacatgatcgatggcgtgaccatcactcgtcagaccgacgagctg
accggtctctcttctatcgtcgtactggatgtcaacgagcgtccgagtgccggtaaagag
atgcgtccgaccgttaagctggtcgacctgaacggcaaagacgtgatgatcccgggtacc
gatgtagccgcccagtacttcctgccgggcaaggcgatcgtgaacctggaagatggtgcc
aacgtgggtgtgggtgacgcggtagcgcgtatcccgcaagaatccggcggtaccaaggac
atcaccggtggtctgccgcgcgttgcggatctgttcgaagcacgtcaaccgaaggaaccg
gcaattctggccgagatctccggtaccatctccttcgggaaagagaccaagggcaaacgc
cgtctggtcatcaccccgactgatggtggcaacgtctacgaagagatgattccgaagtgg
cgtaacctgaacgtgttcgaaggtgaaaaagttgagaagggtgaagtgctggcggacggt
cctgagtctgctcacgacatcctgcgtctgcgcggtatcagcccggtcgccaactacatc
gccaacgaagtgcaagacgtttaccgtctgcaaggcgttaagattaacgacaagcacatc
gaagtcatcgttcgtcagatgctgcgcaagtgcgagatcctgagcgctggcgacaccgat
ctgatcgaaggcgaacaggttgaagttgctcgtgtgaagattgccaaccgtaagctggtt
gccgagggcaagaccccagcgaccttccgtcatgtactgatgggtattaccaaggcatct
ctgagcactgagtccttcatctctgcggcttccttccaggaaaccactcgcgttctgacc
gaagccgccgttggtggcaagcgtgatgaactgcgtggtctgaaagagaacgtcatcgtg
ggtcgtctgatcccggctggtaccggctttgcctaccaccatagccggatcaaccagcgt
gctgccgcagctcgtgctgttggtaccccgcaggtgaccgctgatgaagctcaacagaac
ctggcggatctgctgaacgcagccggtagcttcgacgaagagtaa
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integrated database retrieval system
