Alternaria alternata: CC77DRAFT_1020749
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Entry
CC77DRAFT_1020749 CDS
T05291
Name
(RefSeq) mRNA cleavage and polyadenylation factor IA/II complex
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
aalt
Alternaria alternata
Pathway
aalt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CC77DRAFT_1020749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_1020749
Enzymes [BR:
aalt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
CC77DRAFT_1020749
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CC77DRAFT_1020749
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
SRPRB
MMR_HSR1
AAA_16
AAA_7
AAA_24
AAA_35
ABC_tran
Roc
ATPase_2
TniB
Motif
Other DBs
NCBI-GeneID:
29110722
NCBI-ProteinID:
XP_018385641
JGI:
1020749
UniProt:
A0A177DLW6
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MISLPGLNLSSQPAETQNGPTSTATRTQELAANTEYRFEVSFSRTLTVKLQSGTAEFFGT
ELAPSTTYTFQGTKGAIFTWHGCKLDIGGEVESDYIAEETPMMSCANLHFALENLRDRSI
ASGSVEMGPRVLVVGPENSGKTSLVKTLTSYAVKTSRQPMVINLDPRQGMLSVPGSFSAA
VYSSIVDIEEGWGSSPISGPSPIPVKMPLVYHYGLKDPEEGKVFKPLVTRMALAVTSRLE
EDKLSKQAGFIIDSSGAISQGRNGVYDNIEHIVSEFSINVLITLGSERLYSDLSRKFSAR
TGSDPSETVFVIRLDKSGGCVDRSEEYMEALRHAQIKEYFFGKGDETLAPSSQMADAADL
NIFRVIEGDVNGGVDEYGMTVERQIFEKVTPSEAMQNQLLAITTASPNDPQAVIRDSSIR
GYIYVADVDEAKKKVKLLSPLPGATPGNAMILGKWPETVEGLVN
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatctctctgccaggcctcaacctttcctcgcagcctgccgagacgcaaaatggccct
acttcgacggccacacgaacgcaggagctcgccgccaacaccgaataccgcttcgaagta
tccttctcccgaacactcacggtcaagttgcagtcgggcactgcagagttctttggtacc
gagctggcaccctccaccacatacaccttccagggcacaaagggcgccatcttcacatgg
cacggctgcaagctcgacatcggcggagaggttgagtcggactatatcgctgaagagaca
cccatgatgagttgtgcaaacctacatttcgccctagaaaacttgcgcgacaggagcatc
gccagcggcagtgtcgagatgggcccaagagtgcttgtcgtagggccggagaactcgggc
aagacatcactcgtcaaaaccctcacgtcctatgctgtcaagactagcaggcagccaatg
gtcataaacctggatccgcgccagggtatgctcagtgtgcccggttccttctcagcagct
gtatactcgtccatcgtagacattgaagaaggctggggaagcagtccaatctcggggccc
agccctattccggtgaagatgccgctggtatatcactacggtcttaaagacccggaggag
ggcaaggtgttcaagccgttggtaacgcgcatggcacttgctgtcacaagtagattggag
gaagacaagctcagcaagcaggctggcttcatcattgatagctcaggcgccatcagccaa
gggaggaatggcgtctacgacaacatagaacatattgtttctgagttctctatcaacgtc
ctcataaccctcggctccgaacgcctctactccgacctctcccgaaagttctcagcccga
accggcagcgatccttccgagaccgtcttcgtaatccgtctcgacaagtccggcggttgt
gtagatcgaagtgaagaatacatggaagcactccgccacgcccaaatcaaagagtacttc
ttcggcaaaggcgacgagacacttgcccctagtagccaaatggccgatgctgccgacctc
aacatcttccgcgtcatcgaaggagacgtgaacggtggggttgacgaatacggcatgact
gtcgagcgacaaatcttcgaaaaggttacaccgtccgaggcaatgcaaaatcaactactg
gccatcactacagctagtcccaatgatccacaggctgtcatccgtgacagcagtatcagg
ggatatatctatgtcgcggacgtggatgaggcgaaaaagaaggtcaagctcctcagccca
ctaccaggagcgacaccagggaacgccatgatcttaggcaaatggccagaaactgtcgag
ggtctagttaactag
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