KEGG   Alteromonas australica DE170: EP12_18220Help
Entry
EP12_18220        CDS       T03858                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aaus  Alteromonas australica DE170
Pathway
aaus03030  DNA replication
aaus03410  Base excision repair
aaus03420  Nucleotide excision repair
aaus03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aaus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EP12_18220
   03410 Base excision repair
    EP12_18220
   03420 Nucleotide excision repair
    EP12_18220
   03430 Mismatch repair
    EP12_18220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aaus03032]
    EP12_18220
   03400 DNA repair and recombination proteins [BR:aaus03400]
    EP12_18220
Enzymes [BR:aaus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EP12_18220
    6.5.1.6  DNA ligase (ATP or NAD+)
     EP12_18220
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     EP12_18220
DNA replication proteins [BR:aaus03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    EP12_18220
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     EP12_18220
DNA repair and recombination proteins [BR:aaus03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     EP12_18220
   NER (nucleotide excision repair)
    Other NER factors
     EP12_18220
   MMR (mismatch exicision repair)
    Other MMR factors
     EP12_18220
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AJP45269
LinkDB All DBs
Position
4041925..4043508
Genome map
AA seq 527 aa AA seqDB search
MKAFSELLEQVYFTSSNNAKAELIKAYLAATPDPDRGWAIAAMAGTLKFDFFKRNTIKKL
ISENVDPALFAMSYDYVGEVSETVAHLWPHYTPVSPLPSLSETVETFQHVSRKNVSTTLA
QYLSKMTPAQRWALLKLGTRGLRIGVSARSIKHILADYGNKDIKDIETLWHGVKPPYTEL
LEWLDNKAPKPDISGHVTFHPVMLSHPIEDKEIDTFTPKDWQIENKFDGIRVQLSCHTGA
ADPEKALYSRTGDDISQSFPDLLGAVSGHMVLDGELLVMHGDTVDTFNALQQRLNKKRPS
QTLLSSLPAALMVYDALVLDGKDMTHLPLVQRRQQLEKYLSKGAPERLHLSPLLQADSVN
DLRDLHQSVCENRAIEGLMLKRLDSTYVPGRPKGQWYKWKRDALTVDAVIMYAQRGHGKR
SSFYSDFTFGAWQGERLLPIGKAYSGFTDEELKKLDNWVRRNAIGRFGPVREVKKSLVVE
VAFDAVHPSSRHKSGVAMRFPRIHRIRWDKPAEQADTLASVKSLIET
NT seq 1584 nt NT seq  +upstreamnt  +downstreamnt
gtgaaagcgttcagtgaattactagaacaagtgtattttacatcgagtaataatgcgaaa
gcggagcttattaaagcctatttagccgccacgcccgatccggatagggggtgggcaatt
gcagccatggccggaacattgaagttcgacttttttaagcgaaatacaataaagaaactg
attagcgaaaacgtggacccggccctttttgcgatgagttatgattatgtaggcgaagtc
agtgaaactgtggcgcatttatggcctcactacacgcccgttagccctttgccttcactt
agtgaaaccgtagaaacctttcaacatgtcagccgaaaaaacgtatcaactaccttagct
caatacctttctaaaatgacacccgcgcaacgctgggcactacttaagctgggcactaga
gggcttagaataggagtatctgcccgttccattaaacacatattggcagactatggaaat
aaagatatcaaggacattgaaaccttgtggcatggcgtaaagccaccttatacagaactg
cttgaatggttagacaacaaggcgccaaaaccagatatttctggccacgtgacctttcac
cccgtgatgctatcccaccccatagaagacaaagagattgatacgttcacccccaaggat
tggcaaatagaaaacaagtttgatgggatacgggtacaactttcttgccacactggtgcc
gccgaccctgaaaaggcactttattcaagaacgggggatgatattagccagagttttcct
gacttgctaggcgcggtatcaggtcatatggtattagatggtgagctgctcgtcatgcat
ggcgacacggtagacaccttcaatgcgttacagcaacgcttgaacaaaaagcgcccttct
caaactctactatcctccttgcccgctgcccttatggtatatgacgcccttgtattagac
ggtaaagatatgactcaccttcctttagtacagcgtcggcagcaacttgaaaaatacctg
tccaagggggcacctgaacgccttcatttatcacccttactgcaggccgattcagtcaat
gacctgcgtgatttacatcaaagcgtgtgtgaaaatcgtgcaatagaaggtttaatgctg
aagcgtttagatagcacttatgtaccggggcgacctaaaggacagtggtataagtggaag
cgagatgcgctcactgtagatgcggtgattatgtatgcacaacgtgggcatggaaagcgc
tctagcttttactccgactttaccttcggagcatggcaaggtgagcggttattacccata
gggaaagcctattctggctttaccgatgaggagttaaaaaagctagacaattgggttagg
cgcaacgctattggccgctttggcccagtaagggaagtgaaaaaaagcttggtggttgaa
gtggccttcgacgccgtgcacccatcaagtagacacaagtcgggggttgctatgcggttt
cctaggatccacagaattagatgggataaaccggccgaacaagccgatacccttgcaagc
gttaagtcgctcattgaaacctaa

DBGET integrated database retrieval system