KEGG   Acidovorax citrulli: Aave_2519Help
Entry
Aave_2519         CDS       T00451                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aav  Acidovorax citrulli
Pathway
aav03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Aave_2519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aav03400]
    Aave_2519
Enzymes [BR:aav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Aave_2519
DNA repair and recombination proteins [BR:aav03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Aave_2519
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ABM33092
UniProt: A1TQ54
LinkDB All DBs
Position
complement(2760685..2763504)
Genome map
AA seq 939 aa AA seqDB search
MARRSRTSGTAQEAPRKAPQKAPPDALADYARKRDFRNTPEPGAEPGDALPRGALRFVVQ
KHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQY
GAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGRWTLVRMHGRGNERQPPWLLI
KERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPARGRQAPAPAASSPARRTAARGKAAA
SAPAPAPEPAAGRTARAGTSPRPKKAALPAALAPQLATLVDGPPTDLAEWMFELKFDGYR
ILARIEGGEVRLITRNGNDWTHRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQ
NAFESGRRPGRSAAGSPDDGAVDRSGLVFYVFDLPFLNGHDLRGLPLAERRQALRTLVAE
AGSDTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYGSGRSADWIKLKCGQRQEFV
IGGYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPF
AEGTQVGRKAHWVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATV
AGPSPTPPAAPRPASSEATPSRARSTMTSRRTASAPSPASPPSSLRVTHGDRVIDAASGT
TKLDLVRYYALVAPLMMEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALD
PGHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEA
TTLMRVMLTELGLPGFLKTSGGKGLHVVVPIKRLYGWDAVKGFSQAVVQHMARTIPQLFV
AKSGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVA
TVEDRLREGNAPWDGYAKAAVSITQAMKMLGYEPPRGGR
NT seq 2820 nt NT seq  +upstreamnt  +downstreamnt
atggcacgacgctccaggacctccggcactgcgcaggaagcgccgcggaaagcgccgcaa
aaggcgccaccggacgccctcgcagactacgcccgcaagcgggacttccgcaacaccccc
gagcccggcgcggagccgggcgacgccctgccccggggcgcgctgcgcttcgtggtgcag
aagcactgggcgagccgcctgcactacgacttccggctggaaatcgacggcaccatgaag
agctgggcggtgcccaagggcccgagcttcgatcccagggacaagcgcatggccgtgcag
gtcgaagaccatccggtcgcctacaaccgcttcgagggccagattcccgcgcggcagtac
ggcgcgggccgcgtcatcatctgggacaagggctactgggtgccgctggaggacccggcc
cgcgcgtggcgggcgggcaagctcaagttcgaactgcacggccacaagctccagggccgg
tggacgctggtgcgcatgcacggccggggcaacgagcgccagccgccgtggctgctcatc
aaggagcgcgacggcctggagcgcgatgccgtcgagtacagcgtggtggacgccctgccg
gacagcgtgaagtcgctgcccgacctgcctgagcccgcgcccgcgcggggcaggcaagcc
cctgcccctgccgcctcatcccccgcccgcaggacggccgcccgcggcaaggctgcggcc
tcggcccccgcgccggccccggagccggcggcaggcaggactgctcgggccggaacgtcc
ccgcgcccgaagaaggcggccctgcccgcggcgctggcgccgcaactggccaccctggtg
gacggcccgcccaccgacctggccgaatggatgttcgagctcaagttcgacggctaccgc
atcctcgcccggatcgaaggcggcgaggtgcgcctcatcacccgcaacggcaacgactgg
acccaccgcatgcccggcctggcgcgcgccgtgcgtgccctgccggtggagtccggctgg
atcgatggcgaaatcgtggtgcccgaccggcacggcattccggatttccaggcgctgcag
aacgccttcgagagcgggcgccggcccggacgcagcgcggcgggcagcccggacgacggc
gcggtggaccgcagcggcctggtcttctatgtcttcgatctgcccttcctcaacggccat
gacctgcggggcctgccgctggcagagcgcaggcaggcgttgcgcacgctcgtggccgag
gccggcagcgatacggtgcgcttcagcgacgcgttcgaggcatcgcccggcgagctgatc
gcctcggcttgccggctcggcttcgagggcgtgatcggcaagcgcgtgtcgtcggcctac
gggtccggccggtcggccgactggatcaagctcaagtgcgggcagcggcaggagttcgtg
atcggtggctataccgacccgcagggcacgcgcaccggcctcggctcgctgctgctgggc
gtgcatggcgacgacgggcagttgcactatgccggcaacgtgggctccggcttcagcgag
cgcaccttgacgacgctgctcgggctgctgcgctcactcgccgcagaccgcagtcccttc
gccgaaggcacgcaggtgggccgcaaggcgcactgggtcaagccgcaactgctcgcggag
gtggccttcgcgggctggacgcagacgcgccatgtccgccaggcggtgtttcgcggcctg
cgcgaggacaagcccccgcgcgagatcgtgcgcgagacgcccgcaccggccgccacggtg
gcgggcccgtcccccaccccgccggccgctccacgcccggcttcatccgaagccacgccc
tccagggcccgctccaccatgacctcccgcagaaccgcatccgccccctcgcccgcctcc
ccgccctcttcgctgcgcgtgacccacggcgaccgcgtgatcgatgccgcgagcggaacc
accaagctggacctggtgcgctactacgcgctggtcgcgcccctgatgatggaacacctg
cgccagcgccccgtctcggtcgtgcgggctccggaaggcgtgggcggggagctcttcttc
cagaagcatccggagcacggatcggtggacggcgtgcggacgctggacccggcgctggac
cccggccatccgcccctggccgagatcgcggggccggaaggcctgccggcctgggcccag
atgaacaccatcgagttccacagctggaacgcccgcagcgaccgcatcgaccggcccgac
cggatggccttcgacctcgaccccggcgaaggcgtgccctgggacaaggtgcaggaggcc
accacgctgatgcgcgtgatgctcacggagctgggcctgccgggctttctcaagaccagc
gggggcaaggggctgcacgtggtcgtgcccatcaagcgcctgtacggctgggatgcggtg
aagggcttttcccaggcggtggtgcagcacatggcgcgcacgatcccgcagctgttcgtg
gccaagagcgggccgcgcaaccgcgtgggaaaaatcttcgtggactacctgcgcaacggc
ttcggcgccaccacggtgagcgcatggtccgcccgggcacgacccggcctgggcatttcc
gtgccgctgcgctgggatgaactgggagcgctctcgagcagcaccgaatggaccgtggcc
acggtggaagaccggctgcgcgaaggcaacgcgccctgggacggctacgccaaggcggcg
gtctccatcacgcaggccatgaagatgctcgggtacgaaccgccgcgcggcgggcggtga

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