KEGG   Alteromonas addita: AVL56_18130Help
Entry
AVL56_18130       CDS       T04403                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aaw  Alteromonas addita
Pathway
aaw03030  DNA replication
aaw03410  Base excision repair
aaw03420  Nucleotide excision repair
aaw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aaw00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    AVL56_18130
   03410 Base excision repair
    AVL56_18130
   03420 Nucleotide excision repair
    AVL56_18130
   03430 Mismatch repair
    AVL56_18130
Enzymes [BR:aaw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AVL56_18130
    6.5.1.6  DNA ligase (ATP or NAD+)
     AVL56_18130
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AVL56_18130
DNA replication proteins [BR:aaw03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AVL56_18130
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AVL56_18130
DNA repair and recombination proteins [BR:aaw03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AVL56_18130
   NER (nucleotide excision repair)
    Other NER factors
     AVL56_18130
   MMR (mismatch exicision repair)
    Other MMR factors
     AVL56_18130
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AMJ96039
LinkDB All DBs
Position
4254529..4256145
Genome map
AA seq 538 aa AA seqDB search
MQAFSDLLEQLYYTAGTKAKSQLILHYLATTPDPDRGWAIAAMAGTLRFDFFKRNTVKKL
ITERVDPELFAMSYDYVGEVSETVAHLWPEFTLGEALPSLSEVVDTFANVSKQKVASTLA
NYLTIMTPSQRWALLKLGTRGLRIGVSARSIKQILAEYGNQDITEVEKLWHGVTPPYTDL
LAWLEGNGPKPDISNAVTFHPVMLSHPIAQDDIDDFSPEQWQIEHKFDGIRVQLVCNTTK
EEPEKALFSRTGDDISHAFPDLLDSVDGNMVIDNMVLDGELLVMHNDEVDTFNALQQRLN
KKKPTAALMKTNPAGLIVYDALMLDGKHLTESPLTTRRRALEAWFDKNGIQGHDNKSRLH
LSECLSADSPTDLRALHKKVCENRAVEGLMIKRSSSHYVPGRPKGQWYKWKRDPLVVDAV
MMYAQRGHGKRSSFYSDYTFGAWQDEQLLPIGKAYSGFTDEELKKLDNWVRRNAIGRFGP
VREVKKELVLEVAFDAVHPSKRHKSGVALRFPRIHRIRWDKPANEADTLINVKALIES
NT seq 1617 nt NT seq  +upstreamnt  +downstreamnt
atgcaggcatttagtgacttacttgaacagctttactataccgctggtactaaagccaaa
tctcagctcattctgcattaccttgctactacgccagaccccgatcgcggctgggctatt
gccgcgatggcaggtactcttcgatttgatttcttcaaacgcaataccgttaaaaagctg
ataactgaacgggtagacccagaactgtttgcaatgagctacgactatgtaggcgaagtc
agcgaaacggtagcccacttatggcccgaatttacactaggtgaagcactgcccagtttg
tctgaagtggttgatacatttgcgaatgtgagtaaacaaaaagtcgcttcaacgttggcg
aattatctcaccataatgaccccatcacagcgctgggctctattaaagcttggtacacgg
gggctgagaattggcgtatcggctcgctctatcaaacaaattttggcggaatacggtaac
caagacatcactgaagtagaaaagctgtggcatggggttacaccgccttataccgacctg
ctcgcatggcttgaaggtaacggccctaaaccggatattagcaatgctgtcacctttcat
cctgttatgttatcccaccccattgcgcaagatgatattgatgactttagccccgagcag
tggcaaatagaacacaagtttgacggcattcgagtacagctggtgtgtaataccaccaaa
gaagagccagaaaaggcgctgttttcccgcaccggtgatgacatcagtcatgctttcccc
gacctactcgatagcgttgatggcaatatggtgatagataatatggtgctagacggcgaa
ctgttggtgatgcataacgacgaagtcgatacgtttaatgccctacaacaaaggcttaat
aagaaaaagcctactgctgcgttaatgaaaaccaaccccgcagggcttattgtttatgat
gcactgatgttagacggcaaacacttaaccgaatcccctctcactacccgacgtagagcg
ctagaagcgtggtttgacaaaaatggtattcagggacacgacaataaatcacgactgcac
ttatctgagtgcttatctgccgattcaccaacagatcttcgagcattacataaaaaggta
tgtgaaaatcgcgcggtagaagggttaatgataaagcgttcaagcagccactatgtacca
ggcagacctaaaggccaatggtacaagtggaaacgcgacccgctggtggtagatgcggtg
atgatgtatgcccagcgtggtcacggcaagcgttctagcttttattccgattacaccttt
ggcgcatggcaagatgagcaattgctgcctattggaaaagcttactcgggctttactgat
gaagagcttaagaaactagataactgggtaagacgaaacgccataggccgtttcgggccg
gtgcgagaagtcaaaaaagagctagtactagaagtggctttcgatgcggttcacccgtct
aaacggcataaatcaggcgtagcgttacgatttcctcgtatacaccgtatccgctgggat
aagccagctaacgaggcagatacacttatcaacgtgaaggcacttatcgaatcataa

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