Haploplasma axanthum: NCTC10138_00816
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Entry
NCTC10138_00816 CDS
T05950
Symbol
deaD_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
aaxa
Haploplasma axanthum
Pathway
aaxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10138_00816 (deaD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaxa03019
]
NCTC10138_00816 (deaD_1)
03009 Ribosome biogenesis [BR:
aaxa03009
]
NCTC10138_00816 (deaD_1)
Messenger RNA biogenesis [BR:
aaxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10138_00816 (deaD_1)
Ribosome biogenesis [BR:
aaxa03009
]
Prokaryotic type
rRNA helicases
NCTC10138_00816 (deaD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
DUF6482
Flavi_DEAD
Phage_integrase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEU80446
UniProt:
A0A449BDC6
LinkDB
All DBs
Position
1:859840..861243
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AA seq
467 aa
AA seq
DB search
MNRFNDFMISNEIKEALDLLGYKMPTDIQNKVIPEILKGNNLVVKSRTGSGKTASFAIPL
IEKIVWENRYPQVLVLSPTRELAMQIKEEMFNIGRLKRIKIIPIYGKTAFEGQEKQLRQR
QHVVVGTPGRVLDHLESRTINLSDVEYLVIDEADEMLRMGFIEQIDDIFKHLKVKQVILL
SATLDKKILDTINKYIKDPVYIEEEVSSNIIKEKQKYLKVNKNKTSELFNFINREQVKSA
IIFCNTKDKVEEVYEFLSNERMLIKRLHGDLDQRVRTKAITDFKEGKIRYLVATDVAARG
IDVSEIEYVINYQIPKDLKTYIHRVGRTGRMGKKGLTLAILSEEEISSFEKKMNEIDYEI
EEFVTTKKEQQEYILNKPIEKSKRDEALNKDIMKIHINAGKKTKMRASDIVGTLCSIEGV
NVDDIGVITILDISTFVEIMNGKGEHVYNVLQDKTIKGRLRIVSKAE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaatagatttaatgattttatgataagtaatgaaataaaagaggcacttgatttatta
ggttataaaatgcctactgatatacaaaataaagttatacctgagattttaaaaggaaat
aatcttgttgttaaatcaagaacaggtagtggaaagacagcatcatttgcgatacctttg
atagaaaagatagtgtgggaaaatagatatccacaagttttagttttatccccaactaga
gaactagctatgcagattaaagaagaaatgtttaatattggaagattaaaaagaattaaa
ataattccaatatatggcaaaacagcatttgaaggacaagaaaaacaattaagacaaaga
caacacgtagttgttggaacaccaggaagagttttagatcatttagagagtagaactatt
aatttgagtgatgtagagtatcttgttattgatgaagctgatgaaatgcttagaatgggg
tttatcgaacaaattgatgatatattcaagcatttaaaagttaagcaagttattttattg
tctgcaacacttgataagaaaatattagatacgattaataaatatataaaagatcctgtt
tatatagaagaggaagtaagttcaaatattataaaagaaaaacaaaaatatttgaaagtt
aataaaaataagacttctgaattgtttaactttattaatagagaacaagtaaaatcagcg
attattttttgtaatacaaaagataaagttgaagaagtttatgaatttttaagtaatgag
agaatgcttattaaaagattacatggtgacctagatcaacgtgtaagaacaaaagcaatt
acagattttaaagaaggtaaaataagatacttagttgcaacagatgttgctgcaagagga
attgatgttagtgaaattgaatatgttattaattatcaaattcctaaggatttaaaaaca
tacattcatcgtgttggtagaacgggtagaatgggtaaaaaaggtttaactcttgctatt
ttgagtgaagaagaaattagtagttttgaaaagaaaatgaatgaaattgattatgaaata
gaagaatttgtaacaacaaaaaaggaacagcaagaatatatattaaataaaccaattgaa
aaatctaaaagagatgaagcattgaataaggatattatgaaaattcatattaatgcaggt
aaaaaaactaagatgagagcatctgatattgttggaactctttgttctattgaaggagta
aatgtagatgatattggggttattactattcttgatatttcaacttttgttgagattatg
aatggtaagggagaacatgtatataatgttcttcaagataaaacaataaaaggaagatta
agaatagtttcaaaggctgaataa
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