Candidatus Koribacter versatilis: Acid345_0206
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Entry
Acid345_0206 CDS
T00352
Name
(GenBank) Peptidoglycan-binding domain 1
KO
K21470
L,D-transpeptidase YcbB
Organism
aba
Candidatus Koribacter versatilis
Brite
KEGG Orthology (KO) [BR:
aba00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
aba01002
]
Acid345_0206
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
aba01011
]
Acid345_0206
Peptidases and inhibitors [BR:
aba01002
]
Cysteine peptidases
Family C82
Acid345_0206
Peptidoglycan biosynthesis and degradation proteins [BR:
aba01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Acid345_0206
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ABF39211
UniProt:
Q1IV89
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All DBs
Position
complement(218675..220552)
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AA seq
625 aa
AA seq
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MSRDSRSIISHVLGTAQHARARTSKANIVYVDCLLATDSQRKLAAKRTDDTAMMNLGFAR
CAFVRGCTFGLCVVGILATSACATGKALLPGGETFQAATSGPTVADSSLREIVAAGQLSD
LRWPDFSDYRAYVQTFYESSGYNLAWTRGGQTTPQALAIIEILKQADGKGLNAEDYDASR
WADRTKQLSQPAAAARFDTALTVCVMRYISDLHIGRVNPTHVKFALTGRSAKYDLPQFLT
QRLVNGQNVEAELAAVQPQFAGYKATQAWLQRYIELARQDNGEQLPVPTKALDPGKPYAG
IPRLTSLLHLLGDLPADAVVPAGDVYQAPLVDAVKRYQSRHGLTADGRLGAQTVKELNTP
LSTRVEQLRLTLERWRWLPQEFPQPPVVVNIPEFRLRAYDANHKVVLSMNVVVGKALRHE
TPVFDDEMKYVVFRPYWNVPPSIQRSEIVPAIQRDRDYISKKNYEVTTQAGQVVTSGTIS
DEVLQQLRAGKLAVRQKPGPTNALGLVKLIFPNQYNVYLHSTPSQQLFSQARRDFSHGCI
RVEKPAELSAWALQDKPEWTVERVRAAMQKGPDNVQVNLSKPVPVLILYGTAVAEEDGSV
HFFDDLYGYDADLEKALARGYPYPL
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcgcgactcgcggtctataatctctcacgttttgggaacggcgcagcacgcaaga
gcgcgcacgagcaaggccaacatcgtctacgttgactgcctactggccacggattcacaa
cgcaagcttgccgcaaaaagaacggacgataccgcgatgatgaaccttggctttgcccga
tgtgcttttgtgcgcgggtgtacgttcggcttgtgtgtggttgggatcctcgcgacgagt
gcatgcgcgacgggcaaggccctccttccaggcggcgagacgtttcaggccgcaaccagc
ggaccgactgttgccgatagctcgctgcgtgagattgttgccgcggggcagctttccgac
cttcggtggccggatttttcggattaccgcgcttatgtgcagaccttttacgagtcctct
gggtacaacctagcttggactcgtggcggccagaccacaccccaggcgctggcgatcatc
gagattttgaaacaggcggacggcaaaggcttgaacgcggaagactacgacgcttcccga
tgggctgatcggacaaaacagctgagccagccggctgcggcagcacggttcgacacggca
ctcaccgtctgcgtgatgcgctacatctccgacctgcatatcgggagggtcaatccgacg
cacgtcaaattcgcactcaccggaagaagcgcgaaatacgatctcccgcaattcctgacc
caacgcctggtgaacggccagaacgttgaagcggagcttgcggcggtgcaacctcaattc
gccggctacaaagcgacgcaggcctggctgcaacgctacatagagctggcgcgccaggac
aacggtgagcagttgcccgttccgacgaaggcccttgatccaggaaagccctatgcgggg
ataccgcgccttacgagtttgctgcacctgctcggtgacctgccggccgatgcggttgtc
ccggccggtgacgtttaccaggcgccattggtggatgcggtgaagcgttaccagtcccgc
catggtctcacagctgatggtcgcctgggagcccaaaccgtgaaggaactcaatacgccg
ctaagcacccgcgtggaacagttgcgcctgaccctggagcgctggcggtggctgccgcag
gagttcccgcaacctccggtggtggtgaatattccggagttccgcctgcgagcctatgac
gcgaaccacaaggttgtgttgagtatgaatgtggtggtgggcaaagcgctccgccacgag
acgccggttttcgacgacgaaatgaagtacgttgttttccgtccgtactggaatgtaccg
ccgagcattcaacgttccgagattgtgcccgccattcagcgcgatcgcgactatatatcg
aagaagaactacgaagtgaccacgcaggctgggcaggtcgtgacctcaggcaccatcagc
gatgaggtgctgcagcagttgcgtgcggggaagctcgcggtgcggcagaagccggggccc
accaatgcactgggtctggtgaagctgatcttccccaaccaatacaacgtctacctgcac
agcacgccctcgcagcagctgttttcgcaagcgcggcgggacttcagtcacggttgcatt
cgcgtagaaaagccggccgagttgagcgcctgggcgttacaggacaaaccggaatggacg
gtggaaagagtccgcgccgcgatgcaaaagggaccggacaacgtccaggtcaacctgtcg
aagccagtgccagtgctcattctctatggcactgcggtcgccgaggaagatggatccgtc
cactttttcgacgatctctatgggtacgatgcggaccttgagaaggccttggcaagggga
tatccgtaccccttgtaa
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