KEGG   Alphaproteobacteria bacterium WS11: D5400_08505Help
Entry
D5400_08505       CDS       T05798                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
abaw  Alphaproteobacteria bacterium WS11
Pathway
abaw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:abaw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    D5400_08505 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:abaw03400]
    D5400_08505 (ligD)
Enzymes [BR:abaw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     D5400_08505 (ligD)
DNA repair and recombination proteins [BR:abaw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     D5400_08505 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme PNKP_ligase
Motif
Other DBs
NCBI-ProteinID: AZN71303
UniProt: A0A3Q8XQE8
LinkDB All DBs
Position
1812969..1815557
Genome map
AA seq 862 aa AA seqDB search
MASADPLSTYNAKRDFTRTREPKGKKARTRKDKLRFLVQKHDATRLHYDLRLEWGGVLKS
WAVTRGPSVDPGDKRLAVMTEDHPMSYGDFEGVIPKKEYGGGTVMLWDQGTWEPLHDPEE
GLKEGKLHFNLHGERMTGGWALVRIKPRKGEKRDNWLLIKERDAVAESFEGETGDIITTA
NMTSITSGRSMEEIAASADAVWSSSAKPAAKTAKTEAAQAKRAKRSSTIAMPDFEPPMLA
TLVDAAPEGDDWLHEVKFDGYRLMAAIGGKGVALYTRTGLDWTDKFPDVAKALEGLNCKS
ALIDGEVMASDIKDGGSAFSALQKAIKGGAAKRFFAFDLLALNGKDLKKNPLIERKEALS
QLISDSTATAVVQYSEHVRGHGPSVFRSICKAGQEGIIAKKADAPYRGRRGREWLKVKCT
KRQEFVIGGYSKSDKRGRAFASLLLGTREGEKLVYRGRVGTGFTGETLEELGALLKERTR
KSMPFESVDAQFRRDAVWVKPDLVAEVDYAELTDDGHIRHGSFLGLREDKAADDITLESA
SSDKGTDMSADDEPITPKQNARAKSAASEEVLGIKISSPYRVVFPKQGVTKIDLARYFAV
AADRMLPFVAGHPVSLVRCPQGRTKQCFFQKHASDGFPAEIKRVPIKENSGDTEDYMVLD
SAEALVAAVQMGTLEFHIWGSNMTDLEKPVRMVFDLDPDERLTFDDVREAAFAMRDRLAE
LKLQSVPMVTGGKGVHVIVPLQRRATWTEVKAFSKSFATAFAEEEPDRFVATMSKAKRKG
RIFIDWLRNERGSTAIAPYSTRSREGAPVATPVSWEELAGLEEANSFRLHDMPERLEAPD
PWADATGWRQSLTRAMLKAFSG
NT seq 2589 nt NT seq  +upstreamnt  +downstreamnt
atggcgtccgctgatccgctttcaacctacaacgccaagcgggatttcacccgcacacgc
gagcccaagggcaagaaggcgcgcacgcggaaggacaagctccgatttctcgtgcagaag
cacgacgcgacgcgtctgcactacgatctgcgcctcgaatggggaggggtgctgaaaagc
tgggctgtcacccgcggcccgagcgtcgatcccggagacaagcggctcgccgtcatgacc
gaggatcatccgatgtcctatggcgatttcgagggcgtgatccccaagaaggaatatggc
ggcggcaccgtgatgctctgggaccagggcacgtgggagccgctgcacgacccggaagag
ggcctcaaggaaggcaagctgcacttcaacctgcacggcgagaggatgacgggcggctgg
gctctcgtccggataaagccgcgcaagggcgagaagcgcgacaactggcttctgatcaag
gagcgggacgccgtggctgaaagcttcgaaggcgaaacgggcgacatcatcaccaccgcc
aacatgaccagcatcacgtccggccggtcgatggaggagatcgccgcttcggccgacgcc
gtatggtcgtccagcgcgaaaccggcagccaagaccgccaagacggaagcagcgcaggcg
aagcgcgccaagcgatcatcaaccatcgcgatgccggacttcgagcctccgatgctggcg
acgctcgtcgacgccgcgcccgagggggacgactggctgcacgaggtgaagttcgacggc
tatcgcctgatggcggcgatcggcgggaaaggcgttgccctctacacccgcaccggtctg
gactggacggacaagtttccggacgtcgccaaggcgctcgaagggctgaactgcaagagc
gcgctgatcgacggcgaggtaatggcaagcgacatcaaggatggtggctccgcattctcc
gcactgcagaaggcgatcaagggcggcgcagccaaacgcttcttcgcattcgacctgttg
gcgctgaatggcaaggatctgaagaagaatccgctgatcgagcgaaaggaagcgctttcg
cagctgatctccgacagtacggccacagccgtggtgcagtacagcgagcatgtgcgcgga
catggtccgagcgttttccgctccatctgcaaggctggtcaggaaggcatcatcgcgaag
aaggcggatgcgccttatcgcggccggcgcggacgcgaatggctcaaggtgaaatgcacc
aagcggcaggaattcgtcatcggcggctactcgaaatccgacaagcgcggcagggctttc
gcctcgcttcttcttggaacgcgggaaggcgaaaagctcgtttatcgcggccgtgtcggc
accgggttcacgggcgagacgctcgaggaactcggcgcgctattaaaggagcgcacccgc
aaatcgatgcccttcgaaagtgtcgacgcacagttccgtcgtgacgccgtctgggtaaag
cccgacctcgtggccgaggtggactatgcggagctgaccgatgacgggcacatccgccat
ggctcatttcttggcttgcgcgaagacaaggcggcggacgacatcacgctcgaaagtgca
tcttcagacaaggggacggatatgagcgcggacgacgagcccatcacgcccaaacaaaat
gcgcgcgccaagagcgcggcttcggaagaagtgctcggcatcaagatcagcagtccctac
cgcgtcgtctttccaaagcagggcgtcaccaagatcgacctcgcccgttactttgcggtg
gctgcagaccggatgttgcctttcgttgccggtcatcccgtgtcgcttgtgcgctgcccg
cagggacggaccaagcagtgcttcttccaaaagcatgccagcgacgggttccccgccgag
atcaagcgagtgccgatcaaggagaattccggcgataccgaggattacatggtcctcgac
agcgccgaggccctcgtcgccgcagtccagatgggaacgctcgagttccatatctggggc
tcgaacatgaccgacctcgaaaagccggttcgcatggttttcgatctcgatcccgacgag
cggctgactttcgacgatgtgcgcgaggctgcatttgccatgcgcgaccggctcgcggag
ttgaagttgcagagcgtaccgatggtaaccggcggcaagggcgtgcacgtgatcgtaccg
ctgcaaaggcgcgcaacctggactgaggtgaaagccttttcgaagagctttgcaacggcg
tttgccgaggaggaacccgatcggttcgtcgcgaccatgtccaaggcgaagcgcaagggt
cgcatcttcatcgactggctgcgaaacgagcgggggtcaacggcgattgcaccctattcg
acacgttcgcgcgagggtgcaccggtggcgacgccggtttcctgggaagagttggcgggt
ctggaggaggccaactcgttccggctgcacgacatgcccgagcgtctggaagcgccagac
ccctgggcggacgcgacaggctggcgccagtctttgacaagggccatgctcaaggcattc
tcgggctga

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