Alcanivorax borkumensis: ABO_0735
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Entry
ABO_0735 CDS
T00380
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABO_0735 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abo03019
]
ABO_0735 (recQ1)
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_0735 (recQ1)
Enzymes [BR:
abo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABO_0735 (recQ1)
Messenger RNA biogenesis [BR:
abo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABO_0735 (recQ1)
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABO_0735 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
HTH_28
HTH_23
ResIII
TrmB
Motif
Other DBs
NCBI-ProteinID:
CAL16183
UniProt:
Q0VRL5
LinkDB
All DBs
Position
complement(826252..828393)
Genome browser
AA seq
713 aa
AA seq
DB search
MQSNAHSVLEHVFGYHQFRGEQQTVIDTLIQGDDALVLMPTGGGKSLCYQIPALVRTGTG
VVISPLIALMQDQVDALKALGVRAAFLNSTLAHDQARALESALLQGELDMLYIAPERLIQ
PRTLALLKQAEIALFAIDEAHCVSQWGHDFRNDYLQLSLLHREFPDVPRIALTATADQRT
RTEIAERLDLTQARHFVSSFDRPNIQYRIERKDGARNQLLRLLRAEHAGEAGIVYCLSRN
KVDRVAEWLCQQGINALPYHAGLSGPMREKHQQRFLREDGIVMVATIAFGMGIDKPDVRF
VAHLDLPKSIESYYQETGRAGRDGNPATAWMAYGLEDAIKLKQMLAQGSGNEQHKRNENQ
RLESMLGLCEITHCRRQALLHYFGETLEKPCGNCDTCLHPPETFDATEAAQKALSCVYRT
GQRFGVNHLIDVLTGNRSDKVASAGHDHVSTWNIGNEFSATQWRSIYRQLVARGLLTVDM
NGYGALQLTDACRPYLRGEQPLLLRKEIAKAKKAGLRKSQSNVAEADRTLWEALRACRKR
LAEEEGVPPYVVFHDATLMDMLAIRPRNHREFSAVSGVGDRKLDRYSDDFLAVLNGHAEG
NDNDEADAAGPDSNDILTLALANMDPPAIARQQNVNEQTIYRALSKLIVSGKLSLEQALG
LSHVEIGIIQDALLSQANLAEDTFSYRQIKEQLADDWPTGVLHCVRQAILAQC
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccaatgcccactccgtgctcgaacatgtcttcggctatcatcaattccgtggt
gaacaacaaaccgttatcgataccctgatacaaggtgacgacgccttagtgctcatgccc
accgggggcggtaaatctctttgctaccagattcccgcactggtgcgcacaggtaccggt
gtagtgatcagcccattgattgcactgatgcaagaccaagtggacgcccttaaagcgtta
ggggtgagagcggcctttcttaactccaccctggcgcacgatcaggcccgggcgctggaa
agcgccctgctgcagggtgagctggacatgctctacatcgcccccgaacggctcatacaa
ccgcgcaccctggcgctgctgaaacaggctgagattgccctgttcgccattgatgaagcc
cactgcgtttcccaatggggccatgacttccgcaacgactatctgcagctatccttgctg
caccgggaatttccggatgtgccgcgcattgcgctaaccgccaccgcggaccagcgcacc
cgcacggaaatcgccgagcgactcgacctaactcaggcacggcattttgtctccagcttt
gatcgccccaatatccagtaccgcatcgaacgcaaggacggcgcccgcaaccaactactg
cgcctgctgcgcgcagaacacgccggcgaagccggcatcgtctactgcctgtcacgtaac
aaggtggaccgggtggctgaatggttatgccagcaaggcatcaatgccctgccctaccac
gccgggctgtctggtcccatgcgggaaaaacatcagcagcggtttttacgcgaagacggc
atcgtcatggtggcaacgattgcttttggcatgggtatcgacaagcccgatgtacgcttt
gtggcacacctggatttacctaaaagcatcgagtcctactatcaagaaactggccgtgcc
ggccgcgacggtaatccggccaccgcctggatggcctatggactggaagatgccatcaaa
ttaaaacagatgctcgcccagggcagcggcaacgagcaacacaagcgcaatgaaaaccag
cgtttggaaagcatgctagggctatgtgaaatcacccactgccgccgtcaggccctgcta
cattattttggcgaaaccctggaaaaaccctgcggcaactgcgacacctgcctgcaccca
ccggaaaccttcgacgccaccgaggcagctcaaaaagccctaagctgtgtgtatcgcacc
ggacaacgctttggcgtcaaccatttaatcgacgtccttaccggcaaccgctcggacaaa
gtcgccagcgccggccacgaccatgtgtccacctggaacatcggtaacgaattcagcgct
acccagtggcgcagcatttaccgtcaactggtagcccgtgggcttctcaccgtggacatg
aatggttacggggctctccagctcaccgatgcttgccgcccttatttgcgcggcgagcag
cccctgctcctgcgcaaggaaatcgccaaagcgaagaaagcgggcctgcgcaaaagccaa
tccaacgtggcagaggccgaccgcacactctgggaagcgctgcgcgcctgtcgcaaacgg
ttggcagaagaagaaggcgtgccaccctacgtagtgttccacgacgccaccctgatggac
atgctcgccattcggccacgtaaccatcgggaattttccgccgtaagcggggtgggcgat
cgcaaactggaccgttacagtgacgactttttagctgtcctgaatggccacgcagagggt
aatgacaacgacgaggcagacgctgccggccccgacagcaacgacattcttactctggcc
ctggccaacatggatccacccgctatcgcccgacaacagaacgtgaacgaacagaccatc
taccgagcattgagcaaactaatcgtgagcggtaagttgtcactggaacaagcgttgggc
cttagccacgtagaaatcggtattattcaagatgccttgcttagccaagctaacttggcc
gaagacacgttcagctaccgccagatcaaagaacaactagccgatgactggcccacaggc
gttcttcattgtgtacgtcaagccattttggcgcagtgctaa
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