Azospirillum baldaniorum Sp245: AZOBR_170006
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Entry
AZOBR_170006 CDS
T02152
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
abs
Azospirillum baldaniorum Sp245
Pathway
abs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZOBR_170006 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abs03019
]
AZOBR_170006 (rne)
03009 Ribosome biogenesis [BR:
abs03009
]
AZOBR_170006 (rne)
Enzymes [BR:
abs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AZOBR_170006 (rne)
Messenger RNA biogenesis [BR:
abs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZOBR_170006 (rne)
Ribosome biogenesis [BR:
abs03009
]
Prokaryotic type
rRNA processing factors
AZOBR_170006 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CCC98925
UniProt:
A0A9P1JSF5
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All DBs
Position
2490434..2493607
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AA seq
1057 aa
AA seq
DB search
MAKRMLVDATHPEETRVAVVNGNRLEDLDFEIATRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPIADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPD
VVVEENSPMPGSYAEAEGDGFEGDIPAFATDAGSDGGSDEAADSDEAPEGAAPAESPDVI
GGDEVEEAHRRRARPLRSYKIQEVIKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVL
MPNTGRGGGISRKITNPADRKRLKEILSDLDIPEGMAVILRTAGLERSKQEIKRDLEYLL
RLWDDIRVQTLKSSAPCLIYEEANLIKRSIRDLYTDDIDEIWVEGSAGFNTARDFMRMMM
PSHSKRVMQYQDDTIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGK
STRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRLKEAMK
NDRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVIRSVESASLHVLRAIE
EEGIRKRSSEITVFVPTRIALYILNQKRGELTKIEDRYRFRVMVQADDTLIAPDLRLERV
KARTPEDDVPLVSAERVLAETDRILAAEAEEAEEEAPVVEAAEVAGAEVTERADAAGESE
GDRRRRRRRRRGRGRDREDGRAPFGESAEASDEATEGDEIEAEAADADTDADETAVDEEA
IERAQIDAPEFVINDVDVGPAHIEDDEDEDADLAASEADDGTDAFETNGDANGERKKRRR
GKRGGRRRSRQREGLEAGEGLPAAESEDGVEGEAEAESFPTAVEAGRAVNPPELPADMEP
VEFDWVLTSAVAEDNAADAAPDTAAEGPTAEEAAPVAEEAPARKPRRGRAKATAAEAAES
VTAEPEAAPAKPKRAAKGAAKGGKATAKAAAAPEETAPPPAKPSRSRKAKTAAVEAAPAP
APVAAPVAEEPKKRPARKRKTAADAPAEAAPAPAPVAAPVAEEAKKRPARKRKTAADAPA
EAAPAPAVSEAPVAPANEPASANAAPEAKPRRGWWSR
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgctggtggacgccacgcacccggaggaaacccgggttgccgtggtc
aatgggaacagactcgaagacctcgacttcgaaatcgccacccggaagcaactcaagggc
aacatctaccttgccaaggtgacccgggtcgagccgtcgctccaggcggccttcgtggaa
tacggcgggaaccgccacggcttcctcgccttctcggaaatccatcccgactactaccgc
atcccgatcgccgaccgcgaggctctgctggccgaggagcgccggcttgaggagcaggcc
gaggcccgcgccgaggccgccgccgacggcgcggtgatggccgagccgatccgcccggat
gtggtggtcgaggaaaactccccgatgcccggctcctacgcggaggccgagggcgacggg
ttcgagggcgacatcccggccttcgccaccgacgccggttcggatggcggttcggacgag
gccgcggattcggacgaggctccggaaggcgccgctccggccgagagcccggacgtcatc
ggcggggacgaggtcgaggaggcccaccgccgccgcgcccgcccgctgcgcagctacaag
atccaggaagtcatcaagcgccggcaggtcatgctggtccaggtgaccaaggaggagcgc
ggcaacaagggcgcggcgctgaccacctacctgtcgcttccgggccgctactgcgtgctg
atgcccaacacgggccgcggcggcgggatttcccgcaagatcaccaaccccgccgaccgc
aagcgcctgaaggagatcctgtccgatctcgacattccggaaggcatggcggttatcctg
cgcaccgcggggctggagcgctccaagcaggaaatcaagcgcgacctcgaatatctgctg
cgcctgtgggacgacatccgcgtccagacgctgaagtcctccgcgccctgcctcatctat
gaggaggcgaacctcatcaagcgctcgatccgcgatctctacaccgacgacatcgacgag
atctgggtggagggcagcgccggcttcaacaccgcgcgcgacttcatgcgcatgatgatg
ccgagccacagcaagcgcgtcatgcagtaccaggacgacacgatcccgctgttccaccgc
tatcaggtggaaacgcagatcgacgcgatccacagcccggtcgtgcagctccgctccggc
ggctacatcgtcatcaacccgaccgaggcgctggtttccatcgacgtcaactcgggcaag
tcgacgcgcgagcgcaacatcgaggaaacggcctacaagaccaacctcgaagccgccgac
gaggtggcgcgccaactccgcctgcgcgacctcgcgggcctcatcgtgatcgatttcatc
gacatggaggagccccgcaacaacgccgccgtggagcgccgcctgaaggaggcgatgaag
aacgaccgggcgcgcatccagctcggccgcatctccgccttcggcctgctggagctgtcg
cgccagcgcctgcgcccgtcgctgctggaaaccaacttcgagcgctgcccgcactgctcc
ggcaccggcgtcatccgctcggtggagtccgcctcgctgcacgtgctgcgcgccatcgag
gaggagggcatccgcaagcggtcgtcggagatcaccgtcttcgtgccgacccgcatcgcg
ctctacatcctcaaccagaagcgtggcgagctgaccaagatcgaggaccgctaccggttc
cgcgtcatggtccaggccgacgacacgctgatcgcgccggacctgcggcttgagcgcgtg
aaggcccgcacgccggaagacgacgtgccgctggtcagcgccgagcgtgtcctggccgag
accgaccgcatcctggccgccgaggccgaggaggccgaggaagaggcgcccgtcgtcgag
gccgccgaggtcgcaggggccgaggtcacggaacgcgccgacgccgccggggagagcgag
ggcgaccgccgccgccgccgccgccgccgccgtggccgcgggcgtgaccgcgaggatggc
cgcgcgccgttcggcgagtccgccgaagcgtccgacgaggcgaccgagggcgacgagatc
gaagccgaggccgccgacgccgacaccgacgccgacgagacggcggtcgacgaggaagcg
atcgagcgcgcccagatcgacgctccggagttcgtcatcaacgacgtcgatgtcggcccc
gcccacatcgaggacgacgaggacgaggacgccgatctggccgcctccgaggcggacgac
ggcaccgatgcgttcgagacgaacggtgacgccaatggcgagcgcaagaagcgccgccgc
ggcaagcgcggtggtcgccggcggtcccgccagcgcgagggcctggaggccggcgagggt
ctgcccgccgccgaatcggaagatggcgtcgagggcgaggcggaagccgagtccttcccg
accgccgtcgaggccggccgcgccgtcaacccgccggaactgccggcggacatggagccg
gtcgagttcgactgggtcctgaccagcgcggtggccgaagacaacgccgccgatgccgct
ccggacaccgccgcggagggtccgaccgccgaggaagccgccccggtggccgaggaggct
ccggcccgcaagccgcgccgtggccgcgccaaggcgaccgccgcggaggctgccgagtcg
gtgacggcggagccggaagcggcccccgccaagccgaagcgtgccgcgaagggcgccgcc
aagggtggcaaggccaccgcgaaggccgccgccgcgccggaggaaaccgctccgccgccg
gccaagccgtcgcgcagccgcaaggcgaagaccgcggccgttgaggccgctcccgccccg
gcgccggttgcggccccggtcgccgaggagccgaagaagcgcccggcgcgcaagcgcaag
accgcggcggacgctcccgccgaggcggcgcccgctccggccccggttgcggctccggtc
gccgaggaggcgaagaagcgcccggcgcgcaagcgcaagaccgcggcggacgctcccgcc
gaggcagcacccgctccggcggtcagcgaggcgcccgtcgccccggccaacgagccggcc
agcgccaacgccgctccggaggccaagccgcgccggggttggtggagccgctaa
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