Aliarcobacter butzleri RM4018: Abu_0238
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Entry
Abu_0238 CDS
T00600
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
abu
Aliarcobacter butzleri RM4018
Pathway
abu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Abu_0238 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abu03019
]
Abu_0238 (rnr)
03016 Transfer RNA biogenesis [BR:
abu03016
]
Abu_0238 (rnr)
Enzymes [BR:
abu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Abu_0238 (rnr)
Messenger RNA biogenesis [BR:
abu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Abu_0238 (rnr)
Transfer RNA biogenesis [BR:
abu03016
]
Prokaryotic type
tRNA degradation factors
Abu_0238 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
EPSP_synthase
HTH_25
Motif
Other DBs
NCBI-ProteinID:
ABV66513
UniProt:
A8ERD9
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All DBs
Position
235102..236955
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AA seq
617 aa
AA seq
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MLKELFIKIQTNLKDYTKEELIEIEKFIKEEIVLRNTNNEFELNSKYKIATLKIEKNFAI
LEDLVTPLKNIKIELDELNGAFDGDLVIAKRVFNPKSKIKAKIIKIISSKKAEILVYVKD
RAFYTVKENIRIENKKALTFNENDVLVVDNKSFEVIKNVGNISDSKVDEFISLYLYKELY
RLEKLDFEIDAKMDDKNQRVDLRELPFCTIDPNSAKDHDDAIYFDKDENILYVAIADVSY
FVKEGSDLDKLAFKKSTSIYLPSKVLPMLPPILSEEMCSLKEGLDRYSFVFKLHLDLEKL
SVKKAELFEAVINSHKNFSYGRIDRVIEGHLDLYSKLDKEIFDYLIPLYEITKKFRKKRL
EKGYDFRTTENRLKLRNSELESIEVETSTASHQLIEECMLLANIEASKKVSNIAIFRVHE
EPSFKAISKLVDDVNILGVNVKLQKDVHETITHIQKSAKTSMLSAEVDELIIQSQTQAKY
SSKNLGHFGLGFSSYSHFTSPIRRYSDLVLHRILKTKQTPKNIDEICEHISLNERKVDQL
VWDFEDRKYARWANKHIGEELKVKVVDIEKAKAVCYEKIIGMKVVLENYKGQKLFSKMRV
KIKSADLVTKVIVATIV
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaagaactatttataaaaatacaaacaaaccttaaagattatacaaaagaagaa
ttaattgaaatagaaaaatttattaaagaagagattgttttaagaaatacaaataatgaa
tttgagttaaattcaaagtataaaatagcaactttaaaaatagaaaaaaattttgctatt
ttagaagatttagtaactcctttaaaaaatataaaaatagaattagatgaattaaatggt
gcttttgatggagacttagtaattgcaaaaagagtatttaatccaaaaagtaaaataaaa
gcaaagattataaaaattattagtagtaaaaaagcagaaattttagtatatgtaaaagat
agagctttttacacagtaaaagaaaatataagaattgaaaataaaaaagctttaacattt
aatgaaaatgatgttttagttgttgataacaaatcttttgaagttattaaaaatgttggt
aatataagtgattctaaagtagatgaatttatatcattatacctttacaaagagctttat
agattagaaaaacttgattttgaaatagatgcaaaaatggatgataaaaatcaaagggtt
gatttaagagaacttccattttgtacgattgacccaaatagtgcaaaagatcatgatgat
gcgatatattttgacaaagatgaaaatattttatatgttgctattgcagatgtttcatat
tttgtaaaagaaggaagtgatttagacaaacttgcttttaaaaaatcaacatcaatttat
cttccaagtaaagttttaccaatgcttcctccaattttaagtgaagagatgtgctcttta
aaagagggattagatagatactcttttgtttttaaacttcatttagatttagaaaaattg
agtgtaaaaaaagcagaactttttgaagcagttataaattcgcataaaaatttttcttac
ggaagaattgatagagtaattgaaggacatttggatttatattcaaaacttgataaagaa
atttttgattatttaattcctttatatgaaattacaaaaaagtttagaaaaaaaagactt
gaaaaaggttatgattttagaactactgaaaataggttaaaattaagaaatagtgaactt
gaatcaatagaagtagaaacttcaacagcttctcatcaactaattgaagagtgtatgctt
ttagcaaatattgaagctagtaaaaaagtatcaaatattgcaatttttagggttcatgaa
gaaccatcatttaaagcaatttcaaaacttgttgatgatgtaaatattttgggagtaaat
gtaaaacttcaaaaagatgttcatgaaactataactcatattcaaaaaagtgcaaaaact
tctatgttaagtgcagaagttgatgaacttattattcaatctcaaactcaagcaaaatat
agctcaaaaaatttagggcattttggtttaggattctcttcttattcgcattttacatct
ccaattagaagatattcggatttagttttacataggattttgaaaacaaaacagacacca
aaaaatatagatgagatttgtgaacatatatctttaaatgaaagaaaagtagatcaactt
gtttgggattttgaagatagaaaatacgcaagatgggcaaataaacatataggtgaagag
ttaaaagtaaaagttgttgatatcgaaaaagcaaaagctgtttgttatgaaaaaataata
ggaatgaaagttgtgctagaaaattacaaaggacagaaattattttctaaaatgagagta
aaaataaaatctgccgatttagtaacaaaagttatagtggctactattgtatag
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