Anaerostipes caccae: EYQ97_15270
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Entry
EYQ97_15270 CDS
T06754
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acac
Anaerostipes caccae
Pathway
acac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EYQ97_15270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acac03400
]
EYQ97_15270 (mfd)
Enzymes [BR:
acac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EYQ97_15270 (mfd)
DNA repair and recombination proteins [BR:
acac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EYQ97_15270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
RecG_dom3_C
UB2H
IstB_IS21
AAA_22
ATP-synt
DUF5344
Motif
Other DBs
NCBI-ProteinID:
QMW72549
LinkDB
All DBs
Position
complement(3144558..3148085)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLDHIFENDAVFEQIKTGLENNQGPVLVSGCTDGAKAHLVSALRGKKKRGSYKVIVTADE
NKAKEWVENYRFFGEDAVYFPAKDPLFYSADVHGNAIAKERLRGIESIIKGQGGVFVLSV
DALMDRVVPLAEIKKNRVMISLETEVSEQDITKKFTAMGYERTPFVEAAGEFAVRGGIVD
IYPFTSDCPYRIELWGEEVDSIRSFDAQSQRSIEEVKSLTVYPATEIVLSEERISQGLKK
IEAEYQDLKETFHKAFETDKEVRLTKEYQRIREELSELSMLIGVEGYLPYFYDRLVCFLD
YFPKDTAVYVDEPQHVEERGRGFFLEFTESMKSRLEAGYLLPGQMDTVACFEEALNRLLK
QPVAFLSSLASEVKAAKVTDTFFIETKSVQSYNNSFEQLIKDLKRYQKKEYRILVVSPSV
TRAKRLAEDMRDSGLTVTYDKKPSEDMVPGQIVITPGKLKSGIEYPETKWVLISESDIFS
GRKEKRRKKAAFKGKGEKIKNFADISIGDYVVHEKHGVGIYRGIEKITVNNVEKDYISIE
YKGGDNLFILASALDQIAKYASANAKKPRLNKLGGNEWKKTTKRVKGQVRETAKELVELY
AVRQAKEGYVYDKDTVWQREFEEMFPYEETQDQLNAIEDVKRDMESTKIMDRLICGDVGY
GKTEVAIRAAFKAVTNGKQVAYLVPTTILAQQHYNTFCERFQNYPMTVRVMSRFCTPREQ
KETMEGLKKGIVDVVIGTHRLLSKDVKYKDLGLLIIDEEQRFGVGHKEKIKTMKKDVDVL
SLSATPIPRTLHMSLIGIRDMSILEEPPHDRRAIQTYVMEYNEELVKEAVHREMTRGGQV
YYVYNRVNNIAEITSELQKLLPNAKVAFAHGQMRERELENIMMQFMEKEIDVLVSTTIIE
TGLDIPNVNTMIIHDANQLGLSQLYQLRGRVGRSNRNAFAFLMYKRDTLLKETAEKRLQA
IREFTDLGSGYKIAMRDLEIRGAGNLLGEEQSGHMEAVGYDLYCKMLNDAVLRLKGELSE
DTDFDTTLDLNIDAFLPSAYIRNEVEKLELYKRISAIETKDELEDMQDELLDRFGDLPAA
VVNLLHIALLKSMAHHAYMTDVKQKGEKVSFEMNPEANVQVEKIPDVLSEFPKELSVSAG
EHPVFVLDLSSAKKSAWLSKIEHCVNSLDALIIRS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
gtgttagatcatatttttgagaatgatgcagtgtttgaacagataaaaacaggccttgag
aacaatcagggccctgttttagtgtccggatgcacggacggggcaaaagcccatctggtc
agtgcactgagaggaaaaaagaagcgcggcagctataaagtgatcgtgacagcagatgag
aataaggccaaggagtgggtggaaaactatcggttcttcggagaagacgccgtctacttt
cctgccaaagatccgctgttttacagcgctgacgtccacggaaatgccatcgcaaaagag
cggctcagggggatcgagagtattatcaagggacagggaggcgtctttgtcctgtctgtc
gacgccctgatggaccgggttgtacctcttgcggagatcaagaaaaaccgggtgatgatc
agtctggagacagaggtttccgaacaggatattacgaaaaaatttaccgctatggggtat
gagaggactccgtttgtagaggcggccggagaatttgcggtcagaggcgggatcgtcgac
atttatccgtttacttcggactgtccgtacagaattgaactctggggggaagaggtcgat
tcgatccgcagttttgatgcccagagtcagcggtccattgaagaagtaaagagtctgact
gtctatcctgccacggagattgttttaagcgaagaacggatctcacagggactgaaaaag
atcgaggccgaatatcaggatttgaaagagacgtttcataaagcctttgagacggacaaa
gaggtcagactcacgaaggaataccagaggatcagagaagaactctcggaactttccatg
ctcatcggagtggaaggatatctgccgtatttttatgaccggctggtgtgttttctcgac
tatttcccgaaagataccgcggtctatgtggatgagccgcagcatgtggaagagagagga
cggggcttcttcctggagtttacggagagcatgaaaagccgtctggaggccggatatctg
ctgcctggacagatggacacggtagcttgttttgaggaggcactgaaccgtctgctgaaa
cagccggtggcctttttatcttcactggcatctgaagtgaaggcagcgaaggtgacagac
acgtttttcatagagacaaagtcggtacagtcctataacaacagctttgaacagctgatc
aaggatctgaaaagatatcagaaaaaagaatatcggattcttgttgtctccccttcggta
accagggcaaagcgcctggccgaggatatgagagacagcgggctgactgtcacatacgat
aagaaaccttcagaagatatggttcccggacagatcgttatcacgccgggcaaattaaag
agcggcatcgaatatccggagacgaaatgggtgctgatctccgagagcgatatcttcagc
ggaaggaaagaaaaacgcaggaagaaagccgcctttaagggaaaaggcgagaagataaag
aacttcgcggatatttccatcggcgactatgttgttcatgaaaagcacggcgttggaatc
taccggggtattgaaaaaatcaccgtaaacaacgtcgagaaggattatatcagcatcgag
tataaaggcggggacaatctgttcatccttgcctctgctctggaccagatcgcaaaatat
gccagcgccaatgcaaagaagccccggcttaacaagctgggaggcaatgagtggaagaag
actaccaagcgggtcaaaggccaggtgcgggaaaccgccaaagagctggtggagctgtat
gcggtccgccaggccaaagaagggtatgtctatgataaagatacagtttggcagagagag
tttgaggaaatgtttccttatgaggaaacgcaggaccagctcaatgccatagaggatgtg
aagcgggacatggagagcaccaaaatcatggaccggctcatctgcggggatgtgggatac
ggaaagacggaagttgccatccgggcggctttcaaggctgtaaccaacggaaaacaggtg
gcatatctggtgcccactacgatccttgcccagcagcactacaatacattctgtgagcgc
tttcagaattatccgatgactgtcagggtgatgtccagattctgtactcccagggaacag
aaagagacgatggaaggcctgaaaaaaggaatcgtggatgtggtcatcgggacacaccgg
cttctttccaaagatgtgaagtacaaagacctgggacttttgatcatcgatgaagaacag
cgtttcggcgtgggacataaagagaagatcaagacaatgaagaaagatgtggacgtgctt
tctctctccgcaacaccgattcccaggacgctgcatatgagtctgatcgggatcagggat
atgagcattttggaggaacctccccacgaccggagagcgatccagacttatgtgatggag
tataatgaggagcttgtaaaagaggcagtccaccgggaaatgacgagaggcggtcaggta
tactatgtatataaccgggtcaacaacattgcggagatcacgagtgagctacagaaactc
ctgccaaatgcaaaagtggcctttgcccacggacagatgcgggaaagagagcttgaaaat
attatgatgcagttcatggaaaaggagatcgacgtactcgtctccacgacaatcattgag
accgggctggatataccgaacgtgaacacgatgatcatccatgatgccaaccagctggga
ctttcccagctatatcagctcagggggcgtgtcggacgctccaacaggaacgcatttgca
tttttaatgtacaaaagggacactttattaaaagagacagccgagaaaagactccaggcg
atccgggaatttacggacctgggatcgggatacaagatcgccatgcgggatctggagatc
cggggagcaggaaatcttttaggagaagagcagtccggccatatggaagcggtgggatat
gatctgtactgtaagatgctcaacgacgcggtgctgaggctgaaaggagaactttcagag
gatactgattttgacacgacactggatctgaacatcgatgcctttcttccatctgcctat
atcagaaacgaagtggagaagctggagctttacaagcggatatctgccatcgagacgaag
gatgagctggaagatatgcaggatgagctcctggaccgtttcggggatctgccggcagcg
gtagtcaatctgctccatatcgccctgctgaagtcgatggctcaccatgcctatatgacc
gatgtaaaacaaaagggagagaaagtatcctttgagatgaatccggaggcaaacgtgcag
gtagagaagatcccggatgtgctgagcgaatttccgaaggaactctccgtcagtgccggg
gagcatcccgtattcgtactggatctttcatccgcgaagaaaagcgcatggctatcaaag
attgaacattgtgtgaactcattggatgcgttgattatcagatcgtaa
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