KEGG   Atta cephalotes (leaf cutting ant): 105621845Help
Entry
105621845         CDS       T04923                                 

Definition
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
acep  Atta cephalotes (leaf cutting ant)
Brite
KEGG Orthology (KO) [BR:acep00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:acep01009]
    105621845
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acep03019]
    105621845
   04131 Membrane trafficking [BR:acep04131]
    105621845
   03036 Chromosome and associated proteins [BR:acep03036]
    105621845
Enzymes [BR:acep01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     105621845
Protein phosphatases and associated proteins [BR:acep01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105621845
Messenger RNA biogenesis [BR:acep03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     105621845
Membrane trafficking [BR:acep04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    105621845
Chromosome and associated proteins [BR:acep03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     105621845
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 105621845
NCBI-ProteinID: XP_012058675
UniProt: A0A158NMB7
LinkDB All DBs
Position
Unknown
AA seq 1095 aa AA seqDB search
MNRLAFAVITILTSATHAAVRIRNKYKSITDTESTVNLDLFTAAKQLADSEIELIKVIEN
STKCQRTATNMLSNVKKTKKLGKSKNARPSAALLAAKQEAAKRQLLSDKKSNNNFVPDIY
QKVIDAYKMTRKETGLVFDQSMAEHECIWDPNYPECPARFTRVLQRCEELGLMQRCKLIE
PRCATENELLSKHSQKQIDILKTTTDDSMDSENLELLSSKYDCVYIHPSTYRLSLLAVGS
TINLVESVCKSEIQNGMAIIRPPGHHAMKSEYCGYCFFNNVALAVEKALSSDLANRILIV
DWDVHHGQATQQMFYNDPRVVYFSIHRYEHGEFWPNLRESDFHYIGDELGEGYNFNVPLN
KTGMTNADYIAIFQQVLLPMAYEFQPDLIIVSAGYDAALGCPEGEMLITPACYSHLLSSL
LSLANGKVAVVLEGGYCLKSLAEGAALTLRTLLGDPCPVLQTLDLPSLSIRDTILNVIYS
HKPYWKCYQYQDTHSINSVAHSKEEIGNRHVVMMTFNIDDIKRTSTLKLKELQKQASDYN
SVYLHFVTWSSACISAGSLLQIVDAVLNGECQSGVAIVRPPGHHAEKDIACGFCIFNNVA
VAAMYAVQFYHVKRVLIIDWDVHHGNGTQSIFEEDPKILYISVHRYDNGNFFPNSKLANY
TSTGLNAGEGFNVNIPWNKKGMGDAEYIAAFQQIVMPIAYQFNPELVLISAGFDACIGDT
LGGCLVSPELYGHLTHWLSSLANGRIILSLEGGYNINSISHAMTMCTKALLGDPLPMLDP
NLIPCTSAINSINNVLKTHKKFWPNLQYGMSLPKERLLSKFKTIPNKREEQGKNADKLKQ
IFMEPKIALEGIESEKLDLNLAIDKNCLNLVTDEEISKLTCEVENIKIKNFELHAMKNEA
VEAKRNSELKQNETKNLDVSQNIQKCVNETHQSRGNQQGNSDIHEDRDDEGAASSQSGTR
PITLSEYLSDNLQALTTGEMFAIVPLQDCPHLFTVNEVPPGGIDVTTPCVECASIAENWI
CLQCYTVHCARSINQHAMQHAEEFEHPITLSFSDISVWCYSCEAYVDNPRLYAARNAAHQ
SKFNEELPWTYSESA
NT seq 3288 nt NT seq  +upstreamnt  +downstreamnt
atgaacagacttgcatttgcagttataaccatcttgacgtcggccacacatgccgctgtc
agaatcagaaataaatacaaaagtataacagatactgagtccacggtgaacctggatctg
tttactgctgctaaacaactagcagacagtgagattgaactgataaaagtgattgagaat
tccaccaagtgccaaagaactgcaacaaatatgctttcaaatgtaaagaaaacaaagaaa
cttgggaaatcgaaaaatgcacgtccatcagctgcactattggctgccaagcaagaggca
gcaaaacgacagctgctgtcagacaagaaatccaacaataattttgtaccagacatatat
cagaaagtaatcgatgcatacaaaatgacacgcaaggagactggtcttgtattcgatcaa
agcatggctgagcacgagtgcatctgggatccaaattatcccgagtgtccagctagattt
acacgagttttgcaaagatgcgaggaattgggcctgatgcagagatgtaaactcattgaa
ccgagatgtgccacagagaacgagcttttgagtaagcacagtcaaaaacagattgatatt
ttgaagacaacaacagacgactctatggattctgagaatttggagttgttgtcatccaag
tacgattgtgtctatatccatccgtctacatatagattatctttattagctgtgggctca
acaatcaatttagtagaaagtgtctgcaaaagtgagatacaaaatggcatggctattatc
agaccacctggtcatcatgcaatgaaatcggaatactgcggttattgctttttcaataat
gtagctctggcagtagagaaagctctgagttctgatttggcaaacaggattttaattgtg
gattgggacgttcatcatggacaagcaacgcaacaaatgttttacaatgatccacgcgta
gtttacttttcgatacatcgttatgaacatggcgaattctggcccaacttaagggaatct
gattttcattatattggagacgagctcggagagggttacaacttcaatgtacctttaaat
aaaaccggcatgactaatgctgattacatcgcgatcttccagcaagttttattgccaatg
gcttacgaatttcaaccggatttgataatagtatcagcaggttacgatgcggctctgggt
tgtccagagggtgaaatgctaataactccagcatgttattcacatttgctatcgtcgtta
ttaagtctggcaaatggaaaagtcgctgtggtattagagggtggttattgcctgaaatca
ttagcagaaggtgcagcattgactttaagaacattattaggagatccatgtccagtttta
caaacacttgatttaccatcattgagtatacgtgataccatcttaaatgtaatctactca
cataaaccatactggaaatgttatcaatatcaagatacacacagcattaatagtgtagca
catagtaaagaagagattggtaatcgacatgtagttatgatgacgtttaacattgatgat
atcaaaagaacatcaactttaaaactcaaggaattgcaaaagcaagcctcagattacaat
tctgtttatcttcattttgtaacatggtcaagtgcctgcatatctgctggctctctttta
caaatagtggacgcggttttgaatggagaatgccaatccggagtagccattgtaaggccg
cctggacaccatgctgaaaaagacattgcatgtggtttttgtatatttaataatgttgct
gtggctgcaatgtatgctgtacagttttaccatgtaaagagggtgctaataatagattgg
gatgtgcatcatggaaatggaacgcaatctattttcgaagaagatccaaaaatcctttac
atttctgttcatcgttacgataatggcaacttctttccaaattctaagcttgctaattat
acaagcactggtttaaatgcaggcgaaggattcaacgtgaacataccgtggaacaaaaaa
ggaatgggggatgctgaatatatagcagctttccagcaaattgtaatgcctatcgcttat
caatttaatccagaactagtcctgatttcggccggatttgatgcctgcattggtgataca
cttggaggttgtctcgtaagtccagaactctatggccatttaacccattggctctcatcc
ctggccaatggtcgtataatcctaagtctcgaaggaggttacaacatcaactccatctct
cacgcgatgactatgtgtacaaaggcactcctgggtgatcctttaccgatgttggatcct
aatctcattccttgcactagcgcgatcaattccatcaataatgtactgaagactcacaag
aagttctggcccaacctgcagtatggaatgtccttaccaaaagagagactactttccaaa
tttaagacaattcctaacaaacgtgaagagcaaggaaaaaatgcggataaattgaaacaa
atatttatggaaccaaagatcgccttagaaggaattgagagcgaaaaactagacttgaat
ctggcgattgataagaactgtttgaatttagtgacggacgaggaaatttcgaagttaacg
tgcgaagtagagaatattaaaataaaaaatttcgaattacacgcgatgaaaaacgaagcg
gttgaagcgaaaagaaattctgaattgaagcagaacgaaacgaaaaatctggatgtgtca
caaaatatacaaaaatgtgtgaacgagacgcatcaatcaagaggtaaccaacaaggaaat
tctgacatacacgaagaccgcgatgatgaaggagcagcatcttcacaatccggaacacga
cccataactctatcggaatatctctctgacaatctgcaggctctgacgacaggagaaatg
ttcgcgatcgtgcccctgcaggactgtccacatctgttcacagtcaacgaggttcctcca
ggtggaattgatgtaactacaccgtgtgtcgaatgtgccagtatcgcagaaaattggatt
tgcttgcagtgctatactgtgcattgcgcccgcagtattaatcagcacgcgatgcagcac
gcagaagagttcgagcatcctatcacgctcagctttagcgatatttctgtctggtgctac
agttgcgaagcttatgtcgataatcctcgattatatgcggcaagaaacgcagctcatcaa
agcaagttcaatgaagaacttccctggacttatagcgaaagtgcataa

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