KEGG   Aciduliprofundum sp. MAR08-339: AciM339_0256Help
Entry
AciM339_0256      CDS       T02396                                 

Definition
(GenBank) ATP-dependent DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
acf  Aciduliprofundum sp. MAR08-339
Pathway
acf03030  DNA replication
acf03410  Base excision repair
acf03420  Nucleotide excision repair
acf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AciM339_0256
   03410 Base excision repair
    AciM339_0256
   03420 Nucleotide excision repair
    AciM339_0256
   03430 Mismatch repair
    AciM339_0256
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acf03032]
    AciM339_0256
   03400 DNA repair and recombination proteins [BR:acf03400]
    AciM339_0256
Enzymes [BR:acf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AciM339_0256
    6.5.1.6  DNA ligase (ATP or NAD+)
     AciM339_0256
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AciM339_0256
DNA replication proteins [BR:acf03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AciM339_0256
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AciM339_0256
DNA repair and recombination proteins [BR:acf03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AciM339_0256
   NER (nucleotide excision repair)
    Other NER factors
     AciM339_0256
   MMR (mismatch excision repair)
    Other MMR factors
     AciM339_0256
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 mRNA_cap_enzyme EutA
Motif
Other DBs
NCBI-ProteinID: AGB04153
UniProt: L0HLI2
LinkDB All DBs
Position
complement(210157..211926)
Genome map
AA seq 589 aa AA seqDB search
MEYRLIAETYEKVEGTTKRLEMTDYLVQLFQSTPPEIIDRVIYLTQGKLYADYLGVELGL
AEKLAIKAISKSTGIRENAMKDMLRRYGDLGIVAEEAIKKKRQTTLFSFEEEKKLTVEKV
YENFEKIARAEGEGSQDRKIQLLAELLNLASPLEARYIVRTVEGKLRLGIADMTILDALS
IAFGGSKELRSFVERAYNIHPDLGFIAKKLAVEGIEGVKGIKIQLGIPIRAMLAERLPSL
EEILAKMGGRAAFEYKYDGMRIQGHVGKKIWLYSRRLENLTSQFPDVVEALKEAFKGEEG
IFDGEAVPVDINTGELLPFQVVSHRRGRKYGIEKAMEDYPVVLFLFDVLYLDGEDLTQKP
YPERRKILERVIQPTDRVKFAHRIVSSDISEIKDFFNHAIEDGCEGLVAKNVGEESIYRA
GAREFLWIKYKKDYKVEMGDTVDLVVVGAFAGKGRRKGTYGALLMAAYNPEKDRFETVCK
LGSGFTDEQLAHLPKKFEELKIEKRHPRVWSKMDADYWFVPKVVLEVIGAEITLSPTHTC
ARDVVEKGSGLAIRFPRFTGRWRDDKSPEEATTTKELVEMYRNQIKKMG
NT seq 1770 nt NT seq  +upstreamnt  +downstreamnt
atggaatacaggctcatagccgagacctacgagaaggtagagggcacaacaaaacgtctt
gagatgacagattacctcgttcagcttttccaatccacgcctcctgagataattgatagg
gtcatatatctgacccagggaaagctctatgccgattatcttggtgtggaactgggactt
gcggaaaaacttgcgataaaggccatatccaagtccacgggaataagggaaaatgccatg
aaagatatgcttagaaggtacggtgatttgggcatcgttgcagaggaggccataaagaag
aaaagacagaccacgctcttctcctttgaggaggagaaaaaactcacggttgagaaggta
tatgaaaattttgaaaaaatagcacgggctgaaggtgagggttcccaggatcgcaagatc
cagcttctcgccgaacttctgaaccttgcaagtccccttgaagccaggtatatagtgcgc
actgtggagggtaagttgagacttggcattgcggatatgacaattcttgatgccctgtcc
atagcctttggcgggagtaaggaactgagaagtttcgttgagagggcttacaacatacat
ccagatcttgggttcatagccaaaaaacttgccgttgagggcattgaaggggttaaggga
ataaaaattcagctgggcatacccattcgcgcgatgcttgccgagcgattgccctctctg
gaagagattctcgcaaagatgggaggtcgcgccgcttttgagtataaatacgacgggatg
cgcattcagggtcatgtggggaagaaaatctggctttactcccgcagacttgagaatctc
acctcacagtttccggatgttgtggaagcacttaaggaggcctttaagggtgaggagggt
atatttgatggagaagctgtccctgtggatataaacacaggggaattgctcccatttcag
gtagtatctcacaggcgcggaaggaaatacggtattgagaaggcgatggaggattaccct
gttgtgctctttctctttgatgtgctctatcttgatggagaggatctcacgcagaaaccg
tatcccgagcgcagaaaaattcttgagagagtaattcagcccactgaccgtgttaaattt
gcacaccgtattgtatcctctgatatttccgaaataaaggatttcttcaaccacgccata
gaggatggctgtgagggacttgtggcgaagaatgtaggagaggaaagcatataccgtgca
ggggcgagggagtttctttggataaagtacaagaaggattacaaggtggagatgggagat
accgttgatcttgtggtcgttggtgcgtttgcgggtaagggacgtagaaagggcacctac
ggcgctttgctcatggctgcctacaatcccgaaaaggataggtttgagactgtatgcaag
ttgggaagtggattcacagatgaacaacttgcccaccttccaaagaaatttgaagagttg
aagattgagaagagacatccccgagtttggagtaagatggatgcagattactggttcgta
cccaaggtagtgcttgaggttataggcgcagagataactctcagtcccactcacacatgt
gccagggatgttgtggagaagggttcgggtcttgccataaggttcccacgcttcacgggt
agatggagggatgataagagtccggaggaggccacgaccaccaaggaactggtggaaatg
tacagaaatcagataaagaaaatggggtaa

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