KEGG   Aciduliprofundum sp. MAR08-339: AciM339_1019
Entry
AciM339_1019      CDS       T02396                                 
Name
(GenBank) hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
acf  Aciduliprofundum sp. MAR08-339
Brite
KEGG Orthology (KO) [BR:acf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:acf03016]
    AciM339_1019
Enzymes [BR:acf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     AciM339_1019
Transfer RNA biogenesis [BR:acf03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    AciM339_1019
 Prokaryotic type
   tRNA splicing ligases
    AciM339_1019
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: AGB04891
UniProt: L0HM66
LinkDB
Position
916999..918453
AA seq 484 aa
MWNGPLKKLDSFRWEIPKDYKPGMNVPGIIFASQHMIEQIKKDNAPEQVANVATLPGIIK
ASMAMPDIHWGYGFPIGGVAAFDAEEGIISPGGVGYDINCGVRLLRTDLEEKDVRPKLKE
LVDTIFVNVPSGVGEKGKLRLTFQELNKVLDYGAKWAVENGYGWSEDLDRLEEGGSIKYA
DHTKVSEKAKKRGAPQLGTLGAGNHFLEVQMVDKIYIPDIAKKFGITHEGQIMVMIHTGS
RGLGHQVASDYIRVMEGASRKYGIKLADSQLACAPVKSKEAEDYFAAMSAAANFGFTNRQ
LIMHWVRESFGKVFGEDPEDLGMHLVYGVAHNIAKLEEHTVDGKRVKVYVHRKGATRAFA
AGRPELTDVYRDVGQPVLIPGDMGTASYVLVGTQRAMEETFGSTCHGAGRVMSRHAALRR
FRGEQVKRELWEKKRIYVRSASNRVAAEEAPGAYKNVDDVVKAVEGAGISRIVARMVPLG
VVKG
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgtggaacggtccacttaaaaaactggattcttttagatgggagataccgaaggactat
aagccggggatgaacgtgcccggtataatatttgcctcccagcatatgatagagcagatc
aaaaaggataacgcccctgagcaggttgccaatgtggccacgcttccaggaataataaag
gctagtatggctatgcctgatatacactggggctatggatttccaataggaggcgtggcg
gcttttgatgccgaggaaggcataatatcccctggtggagtgggatatgatataaactgt
ggagtgcgacttttgagaacggatctggaggaaaaggatgtgcgtcccaagttgaaggaa
cttgtggatacaatatttgtgaatgttccctctggcgtgggtgagaagggcaaactgcgg
ctcacatttcaggaattgaacaaggtgttggattatggagcaaagtgggccgtggagaat
ggatacggatggagcgaggacttggatcgcctggaagaagggggaagcataaaatatgca
gatcacaccaaggtcagtgagaaggcaaaaaagagaggtgcgcctcagcttggcactctt
ggtgcgggaaaccattttctggaggtgcagatggttgataagatctacattccagatata
gccaaaaaattcggaataacccatgagggacagataatggtgatgatacacacaggttcc
cgtgggctagggcatcaggttgcaagtgactacattcgtgtcatggagggtgcatcaaga
aagtatgggataaaactcgcagattcccagcttgcatgcgctcctgtgaagagcaaggag
gcagaggattattttgcagccatgagtgcggcagccaatttcggttttaccaacaggcaa
ctgataatgcactgggtgcgtgaatcctttggtaaggtgttcggtgaggatccggaggac
cttggaatgcatcttgtttacggtgtggcccataacattgcgaaactcgaggagcatact
gttgacggaaagagggtaaaggtttatgtgcatcgcaagggggcaaccagagcatttgca
gccggcaggcctgaattgacggatgtctacagggatgtgggacagcccgtgctgattcca
ggagatatgggcactgcctcctacgtgcttgtgggcactcagagagccatggaggagacc
ttcggctccacatgtcatggtgctggaagggttatgagcagacacgctgcacttcgcaga
ttccgtggtgaacaggttaaaagggaactgtgggagaagaaacgcatatacgtgcgcagt
gcgagcaacagggtggccgccgaggaggcgccgggtgcttacaagaacgtggacgatgtg
gtaaaagcagttgaaggcgccggtatatcaagaatcgtcgcaagaatggtacccctcggc
gttgttaagggatga

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