Aciduliprofundum sp. MAR08-339: AciM339_1019
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Entry
AciM339_1019 CDS
T02396
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acf
Aciduliprofundum sp. MAR08-339
Brite
KEGG Orthology (KO) [BR:
acf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acf03016
]
AciM339_1019
Enzymes [BR:
acf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AciM339_1019
Transfer RNA biogenesis [BR:
acf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AciM339_1019
Prokaryotic type
tRNA splicing ligases
AciM339_1019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGB04891
UniProt:
L0HM66
LinkDB
All DBs
Position
916999..918453
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AA seq
484 aa
AA seq
DB search
MWNGPLKKLDSFRWEIPKDYKPGMNVPGIIFASQHMIEQIKKDNAPEQVANVATLPGIIK
ASMAMPDIHWGYGFPIGGVAAFDAEEGIISPGGVGYDINCGVRLLRTDLEEKDVRPKLKE
LVDTIFVNVPSGVGEKGKLRLTFQELNKVLDYGAKWAVENGYGWSEDLDRLEEGGSIKYA
DHTKVSEKAKKRGAPQLGTLGAGNHFLEVQMVDKIYIPDIAKKFGITHEGQIMVMIHTGS
RGLGHQVASDYIRVMEGASRKYGIKLADSQLACAPVKSKEAEDYFAAMSAAANFGFTNRQ
LIMHWVRESFGKVFGEDPEDLGMHLVYGVAHNIAKLEEHTVDGKRVKVYVHRKGATRAFA
AGRPELTDVYRDVGQPVLIPGDMGTASYVLVGTQRAMEETFGSTCHGAGRVMSRHAALRR
FRGEQVKRELWEKKRIYVRSASNRVAAEEAPGAYKNVDDVVKAVEGAGISRIVARMVPLG
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggtccacttaaaaaactggattcttttagatgggagataccgaaggactat
aagccggggatgaacgtgcccggtataatatttgcctcccagcatatgatagagcagatc
aaaaaggataacgcccctgagcaggttgccaatgtggccacgcttccaggaataataaag
gctagtatggctatgcctgatatacactggggctatggatttccaataggaggcgtggcg
gcttttgatgccgaggaaggcataatatcccctggtggagtgggatatgatataaactgt
ggagtgcgacttttgagaacggatctggaggaaaaggatgtgcgtcccaagttgaaggaa
cttgtggatacaatatttgtgaatgttccctctggcgtgggtgagaagggcaaactgcgg
ctcacatttcaggaattgaacaaggtgttggattatggagcaaagtgggccgtggagaat
ggatacggatggagcgaggacttggatcgcctggaagaagggggaagcataaaatatgca
gatcacaccaaggtcagtgagaaggcaaaaaagagaggtgcgcctcagcttggcactctt
ggtgcgggaaaccattttctggaggtgcagatggttgataagatctacattccagatata
gccaaaaaattcggaataacccatgagggacagataatggtgatgatacacacaggttcc
cgtgggctagggcatcaggttgcaagtgactacattcgtgtcatggagggtgcatcaaga
aagtatgggataaaactcgcagattcccagcttgcatgcgctcctgtgaagagcaaggag
gcagaggattattttgcagccatgagtgcggcagccaatttcggttttaccaacaggcaa
ctgataatgcactgggtgcgtgaatcctttggtaaggtgttcggtgaggatccggaggac
cttggaatgcatcttgtttacggtgtggcccataacattgcgaaactcgaggagcatact
gttgacggaaagagggtaaaggtttatgtgcatcgcaagggggcaaccagagcatttgca
gccggcaggcctgaattgacggatgtctacagggatgtgggacagcccgtgctgattcca
ggagatatgggcactgcctcctacgtgcttgtgggcactcagagagccatggaggagacc
ttcggctccacatgtcatggtgctggaagggttatgagcagacacgctgcacttcgcaga
ttccgtggtgaacaggttaaaagggaactgtgggagaagaaacgcatatacgtgcgcagt
gcgagcaacagggtggccgccgaggaggcgccgggtgcttacaagaacgtggacgatgtg
gtaaaagcagttgaaggcgccggtatatcaagaatcgtcgcaagaatggtacccctcggc
gttgttaagggatga
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integrated database retrieval system