KEGG   Pseudarthrobacter chlorophenolicus: Achl_0520Help
Entry
Achl_0520         CDS       T00834                                 

Definition
(GenBank) DNA polymerase LigD, ligase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ach  Pseudarthrobacter chlorophenolicus
Pathway
ach03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ach00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Achl_0520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ach03400]
    Achl_0520
Enzymes [BR:ach01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Achl_0520
DNA repair and recombination proteins [BR:ach03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Achl_0520
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_ligase_OB_2 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ACL38519
UniProt: B8HAQ8
LinkDB All DBs
Position
complement(558520..561006)
Genome map
AA seq 828 aa AA seqDB search
MAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLIPAAANRPATRKRWVNGVGTAEK
PGEVFFQKNLEDSAPDWLPRAAITHKDRTIHYPMVNDPAVLTWFGQINSLEIHVPQWRVD
SQGTQLNPDRLVLDLDPGEGAGLADCREVALLARAILQDVGLAPVPVTSGSKGIHLYAPL
DGTQTSDQISEFARELARALESDHPDLAVSDMKKTLRKGKVLVDWSQNNAAKTTIVPYSL
RGRPTPMVAAPRTWREISSPRLKHLDYQEVLRRVQDGKDPFAAVVRAAGTLDDGDGGTGT
AQDGTHDGHPRLAKYRAMRDPKATPEPFSGAPRGGDAFVIQEHHASRLHWDLRLEHEGVL
ASWALPKGVPESGGKNHLAVQTEDHPMDYLTFHGTIPKGEYGAGDMTIWDTGTYELHKWI
NGKEVIVTLTGSEGGGLGGTRKVALIHTGRGQGSDAEKQWLIHLMDKEDQGARRRHAPSS
AEPAGSAEDVGSAGKSGDASNEQAGAKQVSPDDVRPMMATAGVPSDLLGSDWQVELKWDG
VRAILVADESSVRIFSRNGNDVTRTYPELTDRRCWPEQPFVADGEIIAVGPSGRPDFGLL
QGRMKLTRAADVVKAQKALPVRLMLFDLLHDGGTDLRRLPLRARRQRLEQFFQPSDCPVE
LSMVLEDPVEHIMDSARELGLEGVMAKRTDSRYVSGQRTRTWIKLKTERTQEVVVGGWRP
GKGGRQETVGSLLVGIPDGNKLQYVGRVGSGFSGRELAELRQTVEQLARKTSPFHEVPRP
DSADAHWVTPQLVGEVTYGEWTGPGRLRHPRWRGWRLDKDPSEVVRED
NT seq 2487 nt NT seq  +upstreamnt  +downstreamnt
gtggccgggcgcgagctgacgctgaccaacctggacaaaatcatctacccggaaaccggc
accaccaaggccgatgtgctggcctactacgccgccgtggcccatgtccttattcccgcc
gcagccaaccggccagccacccggaaacgctgggtgaacggagtgggcaccgcggagaag
cccggcgaggtcttcttccaaaagaacctggaggactccgctcccgactggcttccccgc
gccgccatcacccacaaggaccggaccatccactacccgatggtcaacgatcccgccgtc
ctcacctggttcgggcagatcaattccctcgaaatccacgttccccagtggcgggtggat
tcccagggcacccagctgaacccggaccggctggtccttgacctggaccccggcgagggc
gccggcctcgccgattgccgtgaagtggcgctgctggcccgcgccatcctgcaggacgtg
ggcctggccccggtccccgtcaccagcggcagcaagggaatccacctgtacgcgcccctg
gacggcacgcagacctcggaccagatctccgagttcgcccgggaactggcacgagccctg
gaatccgaccacccggacctcgccgtcagcgacatgaagaagaccctccgcaagggcaag
gtgctggtggactggagccagaacaacgccgcgaaaaccaccatcgtgccctattccctg
cgcggccggcccacccccatggtcgcggcgccgcggacgtggcgggagatcagctccccc
aggctcaagcacctcgactaccaggaggtgctgcgtcgggtgcaggacggcaaggacccg
ttcgccgccgtcgtccgtgctgccggaacgcttgacgacggcgatggcggcacgggcaca
gcgcaggacggcacccacgacgggcatccccgactggcgaagtaccgtgcgatgcgcgat
cccaaggccacgcctgagccgttcagtggcgcaccgcgcggcggcgacgcgttcgtgatc
caggaacaccacgccagccgcctgcactgggacctcaggctggagcacgagggcgtcctg
gcatcctgggcgctccccaaaggtgtgccggagtcgggcggcaagaaccacctggccgtc
cagaccgaggaccaccccatggactacctcaccttccacggcaccatccccaagggtgaa
tacggcgccggcgacatgaccatctgggacaccggaacgtatgagctgcacaagtggatc
aacggcaaggaagtaatcgtcaccctcaccggctcagagggcggcgggctgggcggcacc
aggaaggtggccctcatccataccggccgcggccagggcagcgatgccgaaaagcagtgg
ctgatccacctgatggacaaggaggaccagggcgcacgacggcggcacgccccttcgtct
gcggagcctgcggggagtgccgaggacgtgggcagtgccgggaaatccggggacgcatca
aacgaacaggccggcgccaagcaggtttcccccgacgatgtccgccccatgatggccacc
gcgggagtcccctcagacctcctgggcagcgactggcaggttgaactcaaatgggacgga
gtgcgcgccatccttgtggcggatgagtcctcggtccgcattttcagccgcaacggcaac
gacgtcaccaggacctaccccgagctgacggaccggcggtgctggccggagcagccgttc
gtggccgatggtgagatcatcgccgtcggcccctccggcaggccggacttcggcctgctg
cagggcaggatgaaactcacccgcgccgccgacgtcgtcaaagcgcagaaggccttaccc
gtccggctgatgctcttcgacctcctgcacgacggcggcacggacctccggcgcctcccg
ctcagggcgcggcgccaacggcttgaacagttcttccagccctccgactgccctgtggaa
ctgtcaatggtgctcgaggatccggtggaacacatcatggacagcgcacgggagctgggg
ctcgagggcgtgatggccaagcgcacggacagccgctacgtcagcggccagcggacgcga
acctggatcaaactcaagaccgaacgcacccaggaagtggtggtgggcggctggcggccg
ggcaagggcggccgccaggaaaccgtgggatccctgctggtaggtattccggacgggaac
aaactccagtacgtgggccgggtgggcagcggcttcagcggccgcgaactggccgaactg
cggcagaccgtggagcagcttgcccggaagacctcgccgttccacgaggttcccaggcct
gactccgcggatgcgcactgggtcacaccccaactcgtgggtgaggtcacgtacggggag
tggactggcccggggcggttgcggcatccccggtggcggggctggcgcctggacaaggac
ccgtcagaggtggtccgggaggattga

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