Pseudarthrobacter chlorophenolicus: Achl_2147
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Entry
Achl_2147 CDS
T00834
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ach
Pseudarthrobacter chlorophenolicus
Pathway
ach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Achl_2147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ach03019
]
Achl_2147
03009 Ribosome biogenesis [BR:
ach03009
]
Achl_2147
Enzymes [BR:
ach01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Achl_2147
Messenger RNA biogenesis [BR:
ach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Achl_2147
Ribosome biogenesis [BR:
ach03009
]
Prokaryotic type
rRNA processing factors
Achl_2147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ACL40115
UniProt:
B8HA23
LinkDB
All DBs
Position
complement(2411294..2414749)
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AA seq
1151 aa
AA seq
DB search
MNNETELSVNEVEPAVEAAAEPKKAPRTRRKAAPKADDAVAAPPAAEAVPDDAPAAVATP
ETADAPAAPAKAAARRPRARKKTDAAEPLPAFAIDADPAGSGAAAGAADAGADTAAEAAA
AGEVPAEQAETKPVRRRRVATRKAAPAGDPAETQASAETPAAAQEPPAAVALDAETEDRG
AVARKAAVQAAVTTAAEQEPDADEATAGPAQATGTAVPAAAGESATTPGEAAPAAGEAAE
EPGAFASLFLEPASPTSVLFQAPDLSTVVRPAAPAAADQGEDQDDAEDNESEESSGRRRR
RSRGRRGRSRLDDREDAGTDGSDADGASDESDEDETGPAEDGVTSRRRRRRRRGDQDLEL
TGGEGDDPPNTVTRVRAPRAVSEAPASNRVTSVKGSTRLEAKKQRRRESRDTGRRRTVIT
EAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVL
PSMEAAFVDIGRGRNAVLYAGEVNWEAVNLEGKQRRIENALKSGDTVLVQVTKDPVGHKG
ARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRILKDRLPEQAGVIVRTAAEGA
SEEELTHDINRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSG
EEAWDTIEAYVTYVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVID
RTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLE
SNRDLVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVV
THDDPVEHRRANIVAAEQHVHRSDARPSGNRNEGNRSEGQRNEGQRTDVNQEGNRGERKR
RRGRGGQAAEPAPAPAAVAAHPVQPDPHEAERHAKAEATRLALANIAAAAHAAHLHDDEV
AARQTPALQDAGTTEKHDDGMPARPAAVLTFGGEKVALPFVEHADEHQASPALSLDRLAE
AFAHLGQPASPVGSPSRESGTAQAAPAAPEPAEEVASAPRQPVAAAAPARELNAAATADP
SRQRRPRRNRSASRAQGAANATTVEHHESVPAASEGHSHAAKAPEPAAPAEPAAKADAPI
ILGVGVPASEL
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgaaacagagctttccgttaacgaggttgaaccggctgtggaagccgcggcc
gaacccaaaaaggctccccggacccgacgcaaggcagcgccgaaggccgatgacgccgta
gccgcaccccccgctgcagaggcggttccggacgatgccccggctgccgttgcgacgccc
gagaccgcggacgcccccgcagccccggccaaagccgccgcgcgccgtccccgggccagg
aagaagacagacgccgcagagccgctgcccgccttcgccatcgatgcagaccccgccggt
tccggtgcggccgctggtgctgccgacgccggcgctgacactgctgcagaagcggctgct
gccggcgaagtgcccgcggaacaggcagagaccaagccggtccgccgccgccgtgttgcc
acgaggaaggcggctcctgcgggggaccctgcagaaacgcaggcctccgcggaaacgccc
gccgctgcgcaggaaccgcccgccgctgtcgcgctggacgctgaaacggaggaccggggt
gccgtagcccggaaggcggccgtgcaggcagcagtaaccacggctgcagaacaggaacct
gacgctgacgaagccactgccgggccggcgcaggccaccggcacggcggttcccgcggct
gcaggagaatccgcaacgacgccgggcgaagccgccccggctgcaggggaagctgccgag
gaacccggcgccttcgcctcgttgttcctcgagcctgcctcgcccacctccgtgctgttc
caggcccccgacctgagtaccgtcgtccgccccgccgcgcccgccgcagcggatcagggc
gaagaccaggacgacgccgaggacaacgaatccgaggaatcctccggccgccgccggcgc
cgcagccgtggccgccgtggccgcagccggctggacgaccgcgaggacgccggaaccgac
ggctcggacgccgatggcgcctccgacgaatcggacgaggatgaaaccggtccggcggaa
gacggcgtaacgtcccgccgtcgccgccgtcgccgccgcggtgaccaggacctcgaactg
accggcggggaaggcgacgatccgcccaacaccgtgacccgtgtccgcgccccgcgtgcc
gtcagcgaggcacccgccagcaaccgcgtcacctccgtcaagggctccacccgcctggaa
gccaagaagcagcgccgacgcgaatcccgggacacgggccgccgccgcactgtcatcacc
gaagcggagttcttggcccgccgcgaatccgtggaccggcagatgatcgtccgccagcgc
gacgacagaatccagatcggcgtcctcgaggacggcgttctggccgagcacttcgtctcc
aagacccagcaggactcgctgatcggcaacgtctacctgggcaaggtccagaacgtgctg
ccgtccatggaagctgccttcgtggacattggacgcggccgcaacgccgtcctgtacgcg
ggcgaggtgaactgggaagcagtgaaccttgaaggcaagcagcgccgtatcgagaacgcg
ctgaagtccggcgacaccgtactggtccaggtgaccaaggaccccgtgggccacaagggc
gcccgtctgaccagccagatttcgctgccgggccgctacctcgtctacgtcccgggcggt
tccatgaccggaatttcccgcaagctgcccgacgtcgagcggaacaggctcaagcgcatc
ctcaaggaccgcctgccggagcaggccggcgtcatcgtgcgcacggcggccgaaggggcg
tccgaggaggagctgacccacgacatcaaccggctccgcgcccagtgggaaggcatcgaa
agccagtcatcctccaccaaagtcctggctccggagctgctgtacggcgaaccggacctc
accatcaaggtggtccgtgacgtcttcaacgaggacttctccaagctgattgtctccggt
gaggaagcctgggacaccatcgaggcctatgtcacctatgtggccccggacctggtggga
cgcctcgaaaagtggaccaaggaccaggacatcttcgctgcctggcggattgatgagcag
atccacaaggccctcgaacgcaaggtcttcctgccctccggtggctcgctggtgatcgac
cggaccgaagccatgaccgtggtggacgtcaacaccggcaagttcaccggcagcggcggc
aacctcgaagaaaccgtcaccaagaacaaccttgaggcggccgaggaagtggtgcgccag
ctgcggctgcgcgacattggcggcatcatcgtgatcgacttcatcgacatggtcctggaa
tcgaaccgcgacctcgtcctgcgccgcatggtggaatgcctgggccgcgaccgcaccaag
caccaggtagcggaagtcacctcgctgggactcgtccagatgacccgcaagcgcatgggc
accgggctcctcgaagtcttcggcgagcagtgcgaagcctgtgccggccgcggcgtggtc
acccacgacgaccccgtggagcaccgccgcgccaacatcgtggctgccgagcagcacgtc
caccgttccgacgcccgccccagtgggaaccggaacgagggcaaccgcagcgaaggccag
cgcaatgagggccagcgcaccgacgtcaaccaggaaggtaaccgcggcgaacgcaagcgc
cgccgcggacggggcggccaggcggccgaaccggcacccgcacccgcagccgtggccgcc
caccccgtccagccggacccgcacgaggccgaacgccatgccaaggctgaagccaccagg
ctggccctggcgaacattgccgcggccgcgcacgctgcccacctgcatgatgacgaggtg
gcggctcggcaaactcctgccctgcaggacgcgggcaccacggagaagcacgacgacggg
atgccggcacgccccgcggctgtcctgacgttcggcggcgaaaaggtcgcgctgcccttc
gttgagcacgcagacgagcaccaggcctcacctgcgctgtcgcttgaccggctggccgaa
gcgtttgcccacctgggccagccggcttcgcctgttggcagcccgtcacgggagtccggc
acggcccaggccgcgccggccgcccccgaaccggcggaggaagtggcttcggcaccccgg
cagcccgttgctgctgcggccccggcgcgtgagctgaacgccgcagccaccgccgacccg
tcccggcagcgccgtccgcggcgtaaccgcagtgccagcagggcacagggtgcagccaac
gccaccaccgtggaacaccacgagagtgttccggcggccagcgaaggccactcccatgcg
gccaaggcacctgagcctgccgcgccggcagaaccggcagccaaagccgatgcgcccatc
atcctgggcgtaggggttccggcctcagagctctga
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