KEGG   Achromobacter sp. B7: DVB37_13475Help
Entry
DVB37_13475       CDS       T05703                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
achb  Achromobacter sp. B7
Pathway
achb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:achb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DVB37_13475 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:achb03400]
    DVB37_13475 (ligD)
Enzymes [BR:achb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DVB37_13475 (ligD)
DNA repair and recombination proteins [BR:achb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DVB37_13475 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AYD64820
UniProt: A0A386J142
LinkDB All DBs
Position
2976475..2979096
Genome map
AA seq 873 aa AA seqDB search
MADSLKTYRQKRNFQVTSEPMEGGQANEEARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPCFDPSVKRMAVQVEDHPIAYNQFEGQIPEGQYGAGKVIIWDEGVWAPVGDARKGYR
EGHLKFDLQGKKMQGRWALVRMKGKESDKQPPWLLIKDRDAYARPEREFSVVDEMPDSVV
PLRDNAATTQPAARRATPDAQQPGSDTDSAADARLPGRPSDLPDTFKPQLATLVEGMPPN
PDEWLYELKFDGYRLLVRIEGDSVRLYTRNGHDWSAKLPHIVQAFAKLPAKWAWVDGEVV
VLNEQGVPSFQALQNAFDNDRTGDIVFYAFDLPYIGLRDLRDEPLTVRRDLLAQLMETAD
DDHLRFSAAFKEAPSNLVASACKMGLEGIMAKRPSAPYVSRRTDSWLKIKCAQRQEFVIV
GYTAPQGSREGLGALLLAVHEDDGSLRYAGKVGTGFDTQGLLTLHKQLAALQTDKKTVSG
AQASGVQWVKPELVAEVSFSEWTSGGHIRHSVFRGLRQDKPARQITRERPSPPPKEEPAS
ASGKKSARQAKTEAKAKAQTNTKTTAAPAPARSTAVAPTRAKPARLTNPDRVIDPSTKLT
KLDLARYYGLVAPLMLEHLKGRPVSFLRAPAGIDGQLFFQKHLEAAMPGVKPLPKRLDPD
HPPLLEVPTPEAIMSAVQMNVVEFHTWNAVKTAIDKPDRVLFDLDPGEGVKWATMQQAAR
LVHTMLDELGLQSWLKTSGGKGLHVVVPLRRQYDWDTIKSFAQAIVVHLARTLPQIFVSK
SGPKNRVGKIFVDYLRNGFGATTVSAWSARARPGLGVSVPVAWDELDKLSSGAHWTISNI
HERLDAANAPWDDYAPQSVGQAMDALGFKRGAS
NT seq 2622 nt NT seq  +upstreamnt  +downstreamnt
atggccgacagcctgaaaacctatcgtcaaaagcgcaatttccaggtgacctccgagccg
atggagggcgggcaggccaatgaggaggcgcgcgcgtttgtgatccagaagcattgggcc
agccggctgcattacgactttcggctggagctggatggcgccatgaaaagctgggcggtg
cccaaggggccgtgctttgatccgtcggtcaagcgcatggcggtgcaggtcgaagaccac
cccattgcctataaccagtttgaaggccagatacccgaagggcagtacggcgccggcaaa
gtcatcatctgggacgagggcgtgtgggcccccgtgggcgacgcccgcaaagggtatcgc
gagggccacctgaagttcgacctgcaaggcaaaaagatgcaggggcgctgggcgctggtg
cgcatgaagggcaaggaaagcgacaaacagccgccctggctgctgatcaaagaccgcgac
gcctatgcccgccccgaacgcgaattcagcgtggtcgacgaaatgccggacagcgtggtg
ccgctgcgtgacaacgcggccaccacccagcccgccgctcgccgggccacgcccgacgcg
cagcagccaggttcggacacggattccgccgccgacgcccggctgcccggccgcccgtcc
gacttgccagacacgttcaagccccaattggccacgctggtcgaggggatgccgcccaac
cccgacgaatggctgtacgaattgaagttcgacggctaccggctgctggtgcgcatcgag
ggcgattcggtcaggctatacacccgcaacggtcacgactggagcgccaagctgccgcac
atcgtccaggcctttgccaagcttcccgccaaatgggcctgggtggatggcgaagtggtg
gtgctgaacgagcagggtgtgcccagctttcaggcgctgcaaaacgcgttcgacaacgac
cgcactggcgacatcgtcttttacgccttcgacttgccctatatcggcttgcgagacctg
cgcgacgaaccgctgaccgtgcgtcgcgacctgctcgcgcagctgatggaaaccgctgac
gacgaccacctgcgctttagcgcggccttcaaggaagcgccgtcgaacctggtggcctcg
gcctgcaagatggggctggaaggcatcatggccaagcggccgtcggcgccctatgtgtcg
cggcgcacggacagctggctgaagatcaagtgcgcgcagcggcaggaattcgtcatcgtc
gggtacaccgcgccgcagggctcccgggaagggctgggtgcgctgttgctggcggtgcat
gaagacgatggctcgctgcgctatgcgggcaaggtcggcaccggttttgatacgcagggc
ctgcttaccttgcacaaacagcttgccgccctccagaccgacaaaaaaacggtcagtggc
gcgcaggccagcggcgtgcagtgggtcaagcctgagctggtggccgaggtctcgttcagc
gaatggaccagcggcgggcatatccgccattccgtcttccgagggctgcggcaggataaa
cccgcccgccagatcacacgcgaacggccgtcgcccccgcccaaggaggagccggcgtcc
gcgtcgggcaaaaaaagcgcgcgccaggcaaagacagaggcaaaggcaaaagcacagaca
aacacaaagacaactgccgctcccgcgccggcccggtcaacggcggtggcgcccacgcgc
gccaagcccgcgcggctgaccaacccggaccgcgtgatcgacccgtccaccaaacttacc
aagctggacctggcgcgctattacgggctggttgccccgctgatgctggaacatctgaag
ggccgccccgtgtctttcctgcgcgcgcccgccggcatcgacgggcagctgttctttcag
aagcacctggaagccgcgatgccgggcgtcaagcccttgcccaagcggctggacccggat
catccgccgttgctggaggtgcccacgcctgaagccatcatgtcggccgtgcagatgaac
gtggtggaattccatacctggaatgccgtgaaaacggccatcgacaagcccgaccgtgtc
ctgttcgacctggacccgggcgaaggggtgaagtgggcgacgatgcagcaggccgcccgg
ctggtgcacaccatgctggacgaactgggcctgcaaagctggctgaaaaccagcggcggc
aagggcctgcacgtcgtcgtgccgctgcgccgccaatacgactgggacaccatcaagtca
ttcgcgcaagccatcgtggtgcatctggcccgtacgttgccgcagatattcgtgtccaag
agcgggccgaagaatcgcgtgggcaagatctttgtcgactacctgcgcaacggctttggc
gccactaccgtgtcggcctggtcggcgcgcgcccggcccggcctgggcgtgtcggtgccc
gtggcatgggacgaactggacaagctttccagcggcgcgcactggaccatcagcaacatt
cacgaacggctggatgccgccaatgcgccgtgggacgactatgcgccgcaatccgtgggg
caggccatggacgcgctgggtttcaagcgcggggcctcatga

DBGET integrated database retrieval system