KEGG   Acidovorax carolinensis P4: CBP36_11925Help
Entry
CBP36_11925       CDS       T04962                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
acip  Acidovorax carolinensis P4
Pathway
acip03030  DNA replication
acip03410  Base excision repair
acip03420  Nucleotide excision repair
acip03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acip00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBP36_11925
   03410 Base excision repair
    CBP36_11925
   03420 Nucleotide excision repair
    CBP36_11925
   03430 Mismatch repair
    CBP36_11925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acip03032]
    CBP36_11925
   03400 DNA repair and recombination proteins [BR:acip03400]
    CBP36_11925
Enzymes [BR:acip01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CBP36_11925
    6.5.1.6  DNA ligase (ATP or NAD+)
     CBP36_11925
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CBP36_11925
DNA replication proteins [BR:acip03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CBP36_11925
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CBP36_11925
DNA repair and recombination proteins [BR:acip03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CBP36_11925
   NER (nucleotide excision repair)
    Other NER factors
     CBP36_11925
   MMR (mismatch exicision repair)
    Other MMR factors
     CBP36_11925
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ART59453
UniProt: A0A240UEF6
LinkDB All DBs
Position
2580900..2581772
Genome map
AA seq 290 aa AA seqDB search
MHRRSCLALLALAALPALPTQAALAADAPALLLAQIYRPGLPLQDYWVSEKYDGVRGFWD
GRTLRTRGGETVAAPAWFTAGWPEVPMDGELWAGRGRFSHAQSTARQQQPDDAAWRLMRF
MVFDLPGDKGTFDQRLPALNALVEGLGQPWVQAVPQKRIASDAALQALLHRTVRAGGEGL
MLHRGASLYRAGRSDDLIKVKTHEDTEARVVAHLPGKGRHAGRMGALLVEMPSGQRFRLG
AGFSDADRERPPPVGSWVTYRFRGTHDGGLPRFASFVRLRLETPTTHATP
NT seq 873 nt NT seq  +upstreamnt  +downstreamnt
atgcaccgcagaagctgcctcgccctgctggcgctcgccgcccttccggccctgcccaca
caggctgcgctggcggcagacgcgccggccctgctgctggcgcagatctaccgacccggt
ctgccgctgcaggattactgggtgagcgagaaatacgatggcgtgcgtggcttctgggac
ggccgcacgctgcgcactcgtggcggcgaaaccgtggcggcgcccgcctggttcaccgcc
ggctggcccgaggtgccgatggacggggagctgtgggccgggcgcgggcgcttcagccac
gcccagtccaccgcgcgccaacaacagcccgacgacgcggcctggcgcctgatgcgcttc
atggtgtttgacctgcccggcgacaaaggcacgttcgaccaacgcctgcccgccctgaac
gccctcgtggaggggctgggccagccctgggtgcaggccgtgccgcaaaagcgcatcgcc
agcgacgcagcgctgcaggcactgctgcaccgcacggtgcgcgccgggggtgaagggctc
atgctgcaccggggcgcatcgctgtaccgagcaggccgcagcgacgacctcatcaaggtc
aagacgcacgaggataccgaggcccgcgtggtggcccacctgcccggcaagggccgccat
gcggggcgcatgggcgcgctgctggtggagatgccctcgggccagcgtttccggctgggc
gcgggcttcagcgatgccgaccgcgaacgcccgccgcccgtgggcagctgggtgacctac
cgctttcgcggcacccacgacggcggcctgccgcgcttcgctagttttgtgcggctgcgg
ctggaaacgccgaccacccatgcgacgccctga

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