KEGG   Acidovorax carolinensis P3: CBP35_06995Help
Entry
CBP35_06995       CDS       T04998                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
acis  Acidovorax carolinensis P3
Pathway
acis03030  DNA replication
acis03410  Base excision repair
acis03420  Nucleotide excision repair
acis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBP35_06995
   03410 Base excision repair
    CBP35_06995
   03420 Nucleotide excision repair
    CBP35_06995
   03430 Mismatch repair
    CBP35_06995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acis03032]
    CBP35_06995
   03400 DNA repair and recombination proteins [BR:acis03400]
    CBP35_06995
Enzymes [BR:acis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CBP35_06995
    6.5.1.6  DNA ligase (ATP or NAD+)
     CBP35_06995
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CBP35_06995
DNA replication proteins [BR:acis03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CBP35_06995
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CBP35_06995
DNA repair and recombination proteins [BR:acis03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CBP35_06995
   NER (nucleotide excision repair)
    Other NER factors
     CBP35_06995
   MMR (mismatch exicision repair)
    Other MMR factors
     CBP35_06995
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ART54836
UniProt: A0A240UEF6
LinkDB All DBs
Position
complement(1499322..1500194)
Genome map
AA seq 290 aa AA seqDB search
MHRRSCLALLALAALPALPTQAALAADAPALLLAQIYRPGLPLQDYWVSEKYDGVRGFWD
GRTLRTRGGETVAAPAWFTAGWPEVPMDGELWAGRGRFSHAQSTARQQQPDDAAWRLMRF
MVFDLPGDKGTFDQRLPALNALVEGLGQPWVQAVPQKRIASDAALQALLHRTVRAGGEGL
MLHRGASLYRAGRSDDLIKVKTHEDTEARVVAHLPGKGRHAGRMGALLVEMPSGQRFRLG
AGFSDADRERPPPVGSWVTYRFRGTHDGGLPRFASFVRLRLETPTTHATP
NT seq 873 nt NT seq  +upstreamnt  +downstreamnt
atgcaccgcagaagctgcctcgccctgctggcgctcgccgcccttccggccctgcccaca
caggctgcgctggcggcagacgcgccggccctgctgctggcgcagatctaccgacccggt
ctgccgctgcaggattactgggtgagcgagaaatacgatggcgtgcgtggcttctgggac
ggccgcacgctgcgcactcgtggcggcgaaaccgtggcggcgcccgcctggttcaccgcc
ggctggcccgaggtgccgatggacggggagctgtgggccgggcgcgggcgcttcagccac
gcccagtccaccgcgcgccaacaacagcccgacgacgcggcctggcgcctgatgcgcttc
atggtgtttgacctgcccggcgacaaaggcacgttcgaccaacgcctgcccgccctgaac
gccctcgtggaggggctgggccagccctgggtgcaggccgtgccgcaaaagcgcatcgcc
agcgacgcagcgctgcaggcactgctgcaccgcacggtgcgcgccgggggtgaagggctc
atgctgcaccggggcgcatcgctgtaccgagcaggccgcagcgacgacctcatcaaggtc
aagacgcacgaggataccgaggcccgcgtggtggcccacctgcccggcaagggccgccat
gcggggcgcatgggcgcgctgctggtggagatgccctcgggccagcgtttccggctgggc
gcgggcttcagcgatgccgaccgcgaacgcccgccgcccgtgggcagctgggtgacctac
cgctttcgcggcacccacgacggcggcctgccgcgcttcgctagttttgtgcggctgcgg
ctggaaacgccgaccacccatgcgacgccctga

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