KEGG   Acidovorax sp. KKS102: C380_14890Help
Entry
C380_14890        CDS       T02290                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ack  Acidovorax sp. KKS102
Pathway
ack03030  DNA replication
ack03410  Base excision repair
ack03420  Nucleotide excision repair
ack03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ack00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C380_14890
   03410 Base excision repair
    C380_14890
   03420 Nucleotide excision repair
    C380_14890
   03430 Mismatch repair
    C380_14890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ack03032]
    C380_14890
   03400 DNA repair and recombination proteins [BR:ack03400]
    C380_14890
Enzymes [BR:ack01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C380_14890
    6.5.1.6  DNA ligase (ATP or NAD+)
     C380_14890
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     C380_14890
DNA replication proteins [BR:ack03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    C380_14890
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     C380_14890
DNA repair and recombination proteins [BR:ack03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     C380_14890
   NER (nucleotide excision repair)
    Other NER factors
     C380_14890
   MMR (mismatch exicision repair)
    Other MMR factors
     C380_14890
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AFU46675
UniProt: K0I2P5
LinkDB All DBs
Position
3261933..3262796
Genome map
AA seq 287 aa AA seqDB search
MLRRHCLAWLGLAPLAALTTPQAWAADAPALLLANVYRPGMRLADYWVSEKYDGVRGYWD
GHTLRTRGGETVTAPAWFTAGWPDTPMDGELWAGRGRFSHAQSTVRQQQPDDAAWREMRF
MVFDLPAHGGTFDQRLPELNKLVESLDQPWVQAVPQQRVASDAALQKLLLRTVRAGGEGL
MLHRGASMYRAGRSDDLIKVKTHEDAEAKVVAHLPGQGRHAGRLGALVVEMPSGQRFRLG
AGLTDAERDHPPPVGSWVTYRFRGTHDSGVPRFASFVRVRDDMPPTR
NT seq 864 nt NT seq  +upstreamnt  +downstreamnt
atgctccgcagacactgcctggcttggctgggcctcgcgcccctggccgcactgaccacc
ccccaggcctgggccgccgacgcacccgccctgttgctggccaacgtgtaccgccccggc
atgcgcctcgcggactactgggtgagcgaaaaatacgacggcgtgcgcggctactgggac
ggccacacgctgcgcacgcggggtggagagaccgtgacggccccggcatggttcaccgcc
ggctggcccgacacgcccatggacggcgagctgtgggcaggacgcggccggttcagccac
gcccagtccaccgtacgccagcagcagccggacgatgccgcctggcgcgagatgcgcttc
atggtgtttgacctgcctgcgcacggcggcacgtttgaccagcgtctgcccgaattgaac
aagctcgtagagtcgctggaccagccatgggtgcaggcggtgccccagcagcgcgtagcc
agcgacgccgctttgcaaaagctgctgctgcgcacagtgcgcgcaggtggcgaggggctg
atgcttcaccggggcgcatcgatgtaccgcgcagggcgcagtgacgacctcatcaaggtc
aagacccacgaagacgccgaggccaaggtggtcgcccatctgcctggccagggccgccac
gccgggcggctgggtgcgctggtggtggagatgccttcgggccagcggtttcgactgggc
gcagggttgaccgacgcggagcgcgaccacccgccgccggtgggcagctgggtgacgtac
cgcttcagaggcacccacgacagcggcgtgccacgcttcgcgagttttgtgcgggtgcga
gacgacatgccgcccacccgctga

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