Aminobacterium colombiense: Amico_1405
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Entry
Amico_1405 CDS
T01202
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
aco
Aminobacterium colombiense
Pathway
aco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amico_1405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aco03019
]
Amico_1405
Messenger RNA biogenesis [BR:
aco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Amico_1405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF2076
KH_2
PT-VENN
HXXSHH
Motif
Other DBs
NCBI-ProteinID:
ADE57522
UniProt:
D5EG40
LinkDB
All DBs
Position
complement(1433788..1435329)
Genome browser
AA seq
513 aa
AA seq
DB search
MQIMTAIIGIAAGLAAGVAAGFMLSKTIGAKHLENAKLRAETILKEAVQEGEQRKREKLT
EAREESYKLRQELERENKERRSELQRAERRLEQKEENLDKKIDRMSHKEEELRLQKEEVE
KQSAEIELIRLEQVKRLEEIAEMSGEDARQVLLKETEENVQHDLGMLIKDLEEKTRRDAD
KKAKEVLVTAIQRCAVEQTSEVAVSVVPLPSDEMKGRIIGREGRNIRSFETLTGVDLIVD
DTPEAVTLSSFDPVRREVARLSLERLVADGRIHPARIEELVEKATSDVEEQILEAGETAL
LETGIKNMHDELVCLIGQLRFRYSYGQNALQHSLEVSHLSGIIAGELGLDEEMARRAGLL
HDIGKAVDHQIEGPHALIGSDLAKRYGETPEIINAIAAHHEDVEQTSVYDVIVAAADAVS
ASRPGARRESLDAYIRRLEKLEEVAKSFKGVSKAFAIQAGREVRVIVSPNVTDEGVVYKT
AYDIARKIEEEMKYPGQIKVTVTREVRATEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattatgactgctattataggaatagctgcaggccttgctgctggagttgcagca
gggtttatgctttcaaaaactatcggagcaaaacatcttgaaaacgccaaactaagggca
gaaacaattcttaaagaggcggttcaagaaggggaacagcgtaaacgggagaaattgaca
gaggccagggaagaatcttataaacttcgccaggaactggaaagggagaacaaagagcgc
cgatcggagctgcagagagcagaacggcgactcgaacaaaaagaagagaacctcgataag
aaaattgaccgtatgagccataaggaagaagagcttcgcctccaaaaggaggaagtggag
aagcagtcggcagaaatagagcttattcgtcttgagcaagtcaaacgccttgaagaaatc
gctgaaatgtccggagaagacgctcgtcaggttctattaaaagagacagaagagaatgtc
cagcatgacttggggatgttgattaaagatctggaagaaaagacacggcgtgatgcggat
aagaaagctaaagaagtgctcgtaacagcaatacagaggtgtgcggttgagcagacatca
gaagtagcggtaagcgtagttcctttgccttcagatgaaatgaagggtcgtattatcgga
cgggaaggtcgaaacatccgttcttttgaaactctgacaggagtggacctcatagtggac
gatacgcctgaagctgttacgttaagcagtttcgatccagtgcgaagagaagtagcccgt
ctttcacttgaaaggcttgtggctgatgggcgcattcatccagcccgaatagaagaactt
gttgaaaaagcgaccagcgacgtcgaagagcagattcttgaagcaggagaaacggccctt
ctagaaactggcattaaaaacatgcacgatgagttggtatgtcttattggccagcttcga
ttccgttatagttatgggcaaaatgcccttcagcacagccttgaggtttctcacttatcg
ggaattatagcaggagaactggggctggacgaagagatggcccgacgtgccgggttgctc
catgacataggaaaagctgtggaccatcagattgaaggccctcatgctctcattggatct
gatctggcaaagcgctacggagaaacaccagaaatcatcaatgccatagctgcccatcac
gaggatgtggagcagacttctgtatatgatgttatagttgctgcagctgatgcggtgagc
gcatctcgcccaggggccagacgagagagtcttgatgcgtatatacgcagacttgaaaaa
cttgaggaagtggcaaagtcatttaaaggggtaagcaaggcctttgccattcaggctgga
cgagaggtgcgagtcattgtttcaccgaatgtaacggatgaaggggtggtttacaagacg
gcctatgacattgctcgaaagatagaagaggaaatgaagtatcccggtcagattaaagtt
acagtgaccagggaggttcgggcaacagagtacgcgaaatag
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