Actinomadura sp. WMMB 499: F7P10_24920
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Entry
F7P10_24920 CDS
T06213
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
actw
Actinomadura sp. WMMB 499
Pathway
actw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
actw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F7P10_24920 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actw03021
]
F7P10_24920 (rpoB)
03400 DNA repair and recombination proteins [BR:
actw03400
]
F7P10_24920 (rpoB)
Enzymes [BR:
actw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F7P10_24920 (rpoB)
Transcription machinery [BR:
actw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F7P10_24920 (rpoB)
DNA repair and recombination proteins [BR:
actw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F7P10_24920 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QFG23876
UniProt:
A0A5J6UB77
LinkDB
All DBs
Position
5552525..5555992
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AA seq
1155 aa
AA seq
DB search
MAASRNASNTATGPNRVSFARIKEPLEVPDLLALQTDSVDWLLGNERWKARVEAAQKAES
KSVPTQSGLEEIFEEISPIEDFSGTMSLSFRDHRFEPPKYSVEECKDKDMTYSAPMFVTA
EFINNTTGEIKSQTVFMGDFPLMTPKGTFIINGTERVVVSQLTRSPGVYFDRALDKASDK
DIYGCRVIPSRGAWLEFEIDKRDNVGVRIDRKRKQPVTVLLKALGWDEARIREHFGSYES
INVTLEKDHTSGQDDALLDIYRKLRPGEPPTRESAQTLLENLYFNPKRYDVAKVGRYKIN
KKLGLDLDMNQGTLTEDDIVATIEYLVRLHAGEEEGTLGAVPVPIEVDDIDHFGNRRLRT
VGELIQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFM
DQTNPLAGLTHKRRLNALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSL
AAFGRVNPFGFVETPYRRVTDGVVTESIDYLTADEEDRFVIAQANSLLNDDGTFVDDRIL
VRRKGGEVELVPAREVQYMDVSARQMTSVATAMIPFLEHDDANRALMGSNMQRQSVPLLR
SESPLVGTGMEYRAAVDAGDVITAEKAGVVEEVSADYVTVMNDDGTRTTYRVSKFKRSNQ
GTCFNQKPIVDEGQRVEEGQVVADGPCTDNGEMALGKNLLVAFMPWEGHNYEDAIILSQR
LVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRVGADVVPGD
ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEQGKVIGVRVFSRDEGDE
LPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVISKVLPVEDMPFLEDGTPVDIVLNPL
GVPGRMNVGQVLETHLGWVASRGWKVEGDDADWKRALKEIGADEAEPWTNTATPVFDGAR
EDDVTGLIESTLPNRDGQRLVGPGGKARLFDGRTGEPYKDPISVGYIYILKLLHLVDDKI
HARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVLGRVK
VYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEEL
GIDLSRREPSSVEEV
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcctcgcgcaacgcctcgaataccgcaaccggtccgaaccgcgtctccttcgcg
cgcatcaaggagccgctcgaagtcccggacctccttgctctgcagaccgactcagtggac
tggctgctgggcaacgagaggtggaaggcccgggtcgaggcggcccagaaggccgaaagt
aagagcgtcccgacccagtcgggcctcgaggagatcttcgaagagatcagtcccatcgag
gacttctcgggaaccatgtccctctcgttccgcgaccaccggttcgagccgcccaagtac
tccgtcgaggagtgcaaggacaaggacatgacctactccgccccgatgttcgtcacggcg
gagttcatcaacaacaccaccggtgagatcaagagccagacggtgttcatgggcgacttc
ccgctcatgaccccgaagggcaccttcatcatcaacggcaccgagcgcgtcgtcgtctcg
cagctgacccgctcgcccggcgtctacttcgaccgcgccctcgacaaggcgtccgacaag
gacatctacggctgccgggtcatcccgagccgcggcgcctggctcgagttcgagatcgac
aagcgcgacaacgtgggcgtgcgcatcgaccgcaagcgcaagcagcccgtcaccgtgctg
ctcaaggcgctcggctgggacgaagcgcgcatccgcgagcacttcggctcctacgagtcg
atcaacgtgaccctggagaaggaccacacctccggccaggacgacgcgctgctcgacatc
taccgcaagctgcgcccgggcgagccgccgacgcgcgagtccgcgcagacgctcctggag
aacctgtacttcaacccgaagcgctacgacgtcgccaaggtcggccgctacaagatcaac
aagaagctcggcctcgacctggacatgaaccagggcaccctcaccgaggacgacatcgtc
gccacgatcgagtacctcgtccggctgcacgccggtgaggaggagggcaccctcggggcc
gttccggtgccgatcgaggtcgacgacatcgaccacttcggcaaccggcgcctgcgcacg
gtcggcgagctgatccagaaccaggtccggctcggcctcgcccgcatggagcgcgtcgtc
cgcgagcggatgaccacccaggacgtcgaggcgatcacgccgcagacgctgatcaacatc
cggccggtcgtcgcctccatcaaggagttcttcggcaccagccagctgtcgcagttcatg
gaccagacgaacccgctggccgggctgacgcacaagcgccgcctgaacgcgctcggcccc
ggtggtctgtcccgtgagcgggcgggcatggaggtccgcgacgtccacccgtcgcactac
ggccgcatgtgcccgatcgagacgccggaaggcccgaacatcgggctgatcggctcgctc
gccgcgttcggccgggtcaacccgttcgggttcgtcgagaccccgtaccgtcgcgtcacc
gacggcgtcgtcaccgagtcgatcgactacctgaccgccgacgaggaggaccggttcgtc
atcgcgcaggccaactccctgctcaacgacgacggcaccttcgtcgacgaccgcatcctg
gtccgccgcaagggcggcgaggtcgaactggtcccggcccgcgaggtccagtacatggac
gtctcggcccggcagatgacctcggtcgccaccgcgatgatcccgttcctggagcacgac
gacgccaaccgcgcgctgatgggctccaacatgcagcggcagtcggtgccgctgctgcgc
agcgagtcgccgctggtcggcaccggcatggagtaccgcgccgcggtcgacgccggcgac
gtcatcaccgcagagaaggccggtgtcgtcgaggaggtgtccgccgactacgtcaccgtg
atgaacgacgacggcacgcggaccacctaccgcgtgtcgaagttcaagcggtccaaccag
ggcacctgcttcaaccagaagccgatcgtcgacgagggccagcgcgtcgaggagggccag
gtcgtcgccgacgggccctgcaccgacaacggcgagatggcgctcggcaagaacctcctc
gtggcgttcatgccgtgggagggccacaactacgaggacgcgatcatcctgtcgcagcgc
ctcgtccaggacgacgtcctctcctcgatccacatcgaggagcacgaggtcgacgcccgc
gacaccaagctgggccccgaggagatcacccgggacatcccgaacgtctccgaggaggtc
ctggccgacctcgacgagcgcggcatcatccgcgtcggcgccgacgtcgtgcccggcgac
atcctggtcggcaaggtcaccccgaagggcgagaccgagctgacccccgaggagcggctg
ctccgcgcgatcttcggtgagaaggcgcgcgaggtccgcgacacctcgctgaaggtgccg
cacggcgagcagggcaaggtcatcggcgtccgggtgttctcccgcgacgagggcgacgag
ctcccgcccggcgtgaacgagctggtccgggtgtacgtcgcgcagaagcgcaagatcacc
gacggcgacaagctggccggccgacacggcaacaagggcgtcatctccaaggtgctcccg
gtcgaggacatgccgttcctcgaggacggcaccccggtcgacatcgtcctgaacccgctg
ggcgtgcccggccggatgaacgtcggccaggtcctggagacgcacctcgggtgggtcgcc
agccgcggctggaaggtcgagggcgacgacgccgactggaagcgcgcgctcaaggagatc
ggcgccgacgaggccgagccgtggaccaacaccgcgaccccggtgttcgacggcgcccgc
gaggacgacgtcaccggcctgatcgagtccaccctgccgaaccgcgacgggcagcggctc
gtcggcccgggcggcaaggcgcggctgttcgacggccggaccggcgagccctacaaggac
ccgatctcggtcggctacatctacatcctcaagctgctgcacctggtcgacgacaagatc
cacgcgcggtcgaccggtccgtactccatgatcacccagcagccgctcggcggtaaggcc
cagttcggcggccagcgcttcggtgagatggaggtgtgggcgctggaggcgtacggcgcc
gcctatgccctgcaggagctcctgaccatcaagtccgacgacgtcctcggccgcgtgaag
gtctacgaggccatcgtcaagggcgagaacatccccgagcccggcattcccgagtccttc
aaggtgctcatcaaggagatgcagtcgctctgcctcaacgtcgaggtgctctcgagcgac
ggcatgtccatcgagatgcgcgacaccgacgaggacgtcttccgcgccgcggaggagctc
ggcatcgacctgtcccggcgcgagccgagcagtgtcgaagaggtctga
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