KEGG   Anser cygnoides domesticus (swan goose): 106044893Help
Entry
106044893         CDS       T04896                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
acyg  Anser cygnoides domesticus (swan goose)
Pathway
acyg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:acyg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    106044893 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:acyg03400]
    106044893 (LIG4)
Enzymes [BR:acyg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106044893 (LIG4)
DNA repair and recombination proteins [BR:acyg03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     106044893 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme SKA1
Motif
Other DBs
NCBI-GeneID: 106044893
NCBI-ProteinID: XP_013050534
LinkDB All DBs
Position
Unknown
AA seq 912 aa AA seqDB search
MASPPAPQPSPRRTVASHVPFADLCATLERMQACKSRPEKTKYFKDFLDSWRNFHHALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAARNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGISQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPTVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERIQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHKVFKDNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEALSKRYEILSNVFTPVTGRIHVVHKKTARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAIAETPAPNEKPTVFHSICRIGSGYTMKELYDLGLKLAKHWKPYHRRDPP
CNILCGIEKPEVYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLADLRSRAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKVIGIAEQFKAPDLSNVNKV
SNVFEDVEFCVMTGTGKHSKSELESRIAECGGSVVQNPGPDTYCVIAGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAVMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMKDNKMMPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAIVNEPRTKIHGTRLS
IRALELRFHGAKVVSCLEEGVSHVIIGEDHSRVEEMKALRRTFGKKFKIVSELWVTESVK
EGVPKNENQYLI
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttccccgcccgccccgcagccgtctcctcgcaggacggtcgcctcgcacgtgccc
tttgcggatctgtgcgccaccctggagcggatgcaggcctgcaagtcccggccggagaaa
accaagtatttcaaggacttcctggactcgtggaggaacttccaccacgctcttcaccag
aaggagaaggatgtcaccgattcgttttatccggcgatgcgactcattctcccgcagttg
gagagggaaaggatggcgtatgggattaaggaaaccatgctcgcgaagctgtacattgag
ctgctcaatttgccaaaagatgggaaagacgctgcgaagcttttaaactacaggacacct
gccggttcgcgtggagatgctggagactttgccatgattgcatactttgtgttaaaacct
aggagccccaaacgaggcaggctgacagtggaacaggtcaacgaactgttagatgccata
gctaacaacaatgctgctagaaacaaggggctgttaaagaaaagccttcttcagttaatt
acccagagcacagcgcttgagcaaaagtggctcatccggatgattataaaggatctaaaa
ctgggcattagtcaacaaactatattttccatttttcaccccgatgctgttgaattacac
aatgtcacgacagatttggaaaaagtttgtagacaattgcatgatcccactgtctcactt
agcgatgtttctatcatgttattttctgcctttaagccaatgcttgctgctattgccgat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaaactggat
ggtgaacgtatacagatgcacaaagacggcgatgtgtataaatatttttctagaaatggg
tttgactatacgcagcaatttggcgcttccccccttgatggctcactaacgccatttatt
cataaggtatttaaagacaacatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaaccttcatgcaaaaaggaaacaaatttgacataaaacgaatggtg
gaggactctgatctgcagacctgcttctgtgtgtttgatgtgctgatggttaacgatcag
aagttgggtcatgaagcgctgagcaaaaggtacgagatcttaagcaatgtatttacccca
gtaactggcaggatacatgtcgtacataaaaaaactgccagaacgagaaaagaagtaatt
gatgctttaaatgaagcgatcgataacagagaggaagggattatggtcaaggatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatacgtc
aatgggctgatggacgagcttgaccttctgatcgttggtggttactggggaaagggctta
cgtggtggaatgatgtctcattttctgtgtgcgattgcagagactccggctccaaatgaa
aaacctactgttttccactctatttgtcgcattggctctggctacactatgaaggagttg
tatgatctgggtttgaaactggctaaacactggaagccctaccataggagggaccctccc
tgtaatattttgtgtggcattgaaaaacctgaagtgtacattgaaccttgtaactccgtc
atcgttcaggtcaaggcagctgagattgttaacagcgatatgtacaaaactgactgtacc
ttgagatttccccgaattgagaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctcgcagatctcagaagtagagcagaggggaagctggcgtccaagcacctt
catattgacgaatacgatgagccgcaagagaagaaaaggaaaactgtatcgaaggtgaag
aaggtaatcggaatagccgagcagtttaaagctcctgatctttccaatgtaaacaaggtt
tcaaatgtgtttgaagacgtagagttttgtgttatgacaggcacaggaaaacactccaaa
tctgagctggaaagccgaatagccgaatgtggtggcagcgtggtacagaaccctggacca
gacacttactgtgtcattgcgggagctgagaacgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgaaggcagagtggcttctgcagtgttttcagtccaaaatgctt
gtaccttggcagccagccgttatgattcacatgtcccctgacactaaagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtattctcaagaatgaaggataataagatgatgcccttggacgtgattgctgagtta
gaagaacgttactcatggaacagctgtcaactcagtatattcagaggaaacactatttat
gtggactgttatgctattgttaacgaacccagaaccaaaatccacggaacaagactatca
attagagctttggagctccgttttcatggtgcaaaagtagtgtcttgccttgaagaaggt
gtctcccatgtcattataggagaagatcattcccgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatctgagctgtgggtaacagagtcagtgaag
gaaggagtcccaaagaatgaaaatcagtacttgatttaa

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