KEGG   Anaeromyxobacter dehalogenans 2CP-C: Adeh_4160Help
Entry
Adeh_4160         CDS       T00326                                 

Definition
(GenBank) DNA ligase I, ATP-dependent (dnl1)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ade  Anaeromyxobacter dehalogenans 2CP-C
Pathway
ade03030  DNA replication
ade03410  Base excision repair
ade03420  Nucleotide excision repair
ade03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ade00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Adeh_4160
   03410 Base excision repair
    Adeh_4160
   03420 Nucleotide excision repair
    Adeh_4160
   03430 Mismatch repair
    Adeh_4160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ade03032]
    Adeh_4160
   03400 DNA repair and recombination proteins [BR:ade03400]
    Adeh_4160
Enzymes [BR:ade01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Adeh_4160
    6.5.1.6  DNA ligase (ATP or NAD+)
     Adeh_4160
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Adeh_4160
DNA replication proteins [BR:ade03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Adeh_4160
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Adeh_4160
DNA repair and recombination proteins [BR:ade03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Adeh_4160
   NER (nucleotide excision repair)
    Other NER factors
     Adeh_4160
   MMR (mismatch exicision repair)
    Other MMR factors
     Adeh_4160
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ABC83924
UniProt: Q2IH69
LinkDB All DBs
Position
complement(4784950..4786491)
Genome map
AA seq 513 aa AA seqDB search
MLLAELAEVSRAVAATPARLEKIARLADALGRLAPDERAVGASWLAGDLPGGRVGIGAAT
LRAALEAAPPERSGPGLTVAEVDAALRRIAAVAGPGSGAARRRELDALLARAGNPERRFL
AALVLGELRQGALEGVLADAVAKAAGLPAAEVRRAAMLAGALPPVAEAALSEGAAGLARF
RLRVGEPVSPMLAQTAADVDEALRALGGEAALEWKLDGARIQAHRDGEAVRVFSRSLRDV
TAAVPEVVALLRAAPEPRLVLDGEAIALRADGTPEPFQVTMRRFGRKLDVERLAPELPLT
AFFFDALVAGGAELLARPERERWAALARAIPAERRVPRLVTRDPAEARAFLEDALARGQE
GVVAKALDAPYEAGRRGAAWLKVKRAHTLDLVVLAAEWGSGRRRGWLSNLHLGARDPASG
GFVMLGKTFKGMTDAMLAWQTDRLKALATGPLDAWQVPVRPELVVEVAFDGIQSSPRYPG
GLALRFARVKRYREDKRPEDADTIETVRGLYGG
NT seq 1542 nt NT seq  +upstreamnt  +downstreamnt
gtgctgctcgccgagctcgccgaggtctcccgcgcggtggccgccaccccggcgcgcctg
gagaagatcgcgcgcctcgccgacgcgctcggccggctcgcgccggacgagcgcgcggtg
ggcgcgagctggctcgccggcgacctgcccggtgggcgcgtcggcatcggcgcggccacg
ctgcgggcggcgctcgaggcggcgccgccggagcgcagcgggccggggctcacggtggcg
gaggtggacgccgccctccgccgcatcgcggccgtggccggcccgggctccggcgccgcg
cgccgccgggagctggacgcgctcctcgcccgcgccggcaaccccgagcgccggttcctc
gcggcgctcgtcctcggcgagctgcgccagggcgcgctggagggcgtcctcgccgatgcg
gtggcgaaggcggcggggctccccgcggcggaggtccggcgcgcggccatgctcgcgggc
gcgctcccgcccgtcgcggaggcggcgctctccgagggcgccgccgggctggcgcgcttc
cggctgcgggtgggggagccggtgtcgcccatgctggcccagaccgcggcggacgtggac
gaggcgctccgggcgctcggcggcgaggccgcgctggagtggaagctcgacggcgcgcgg
atccaggcgcaccgcgacggcgaggcggtgcgggtgttctcgcgctcgctgcgcgacgtg
accgcggcggtgccggaggtggtggcgctcctgcgcgccgcgcccgagccgcggctcgtg
ctcgacggcgaggccatcgcgctccgcgccgacggcacgcccgagccgttccaggtcacc
atgcgccgcttcggccggaagctggacgtggagcggctcgcgcccgagctgccgctgacc
gcgttcttcttcgacgcgctggtggccggcggcgcggagctgctggcgcgccccgagcgc
gagcgctgggccgcgctcgcgcgggccatcccggcggagcgccgcgtcccgcggctcgtc
acccgcgatcccgccgaggcccgcgcgttcctcgaggacgcgctcgcccgcggccaggaa
ggcgtggtggcgaaggcgctcgacgcaccctacgaggccggccgccgcggcgccgcgtgg
ctcaaggtgaagcgcgcgcacacgctcgacctcgtggtgctcgccgcggagtgggggagc
ggccggcgccgcggctggctctcgaacctgcacctcggcgcgcgcgaccccgcctccggc
ggcttcgtgatgctcgggaagacgttcaagggcatgaccgacgccatgctcgcgtggcag
accgaccggctgaaggcgctcgccaccgggccgctcgacgcctggcaggtcccggtgcgc
ccggagctggtcgtggaggtcgcgttcgacgggatccagtccagcccccggtaccccggc
ggcctcgccctccgcttcgcgcgcgtgaagcgctaccgcgaggacaagcgccccgaggac
gcggacacgatcgagacggtgcgggggctgtacggagggtga

DBGET integrated database retrieval system