KEGG   Alicycliphilus denitrificans BC: Alide_2685Help
Entry
Alide_2685        CDS       T01397                                 

Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
adn  Alicycliphilus denitrificans BC
Pathway
adn03030  DNA replication
adn03410  Base excision repair
adn03420  Nucleotide excision repair
adn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:adn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Alide_2685
   03410 Base excision repair
    Alide_2685
   03420 Nucleotide excision repair
    Alide_2685
   03430 Mismatch repair
    Alide_2685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:adn03032]
    Alide_2685
   03400 DNA repair and recombination proteins [BR:adn03400]
    Alide_2685
Enzymes [BR:adn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Alide_2685
    6.5.1.6  DNA ligase (ATP or NAD+)
     Alide_2685
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Alide_2685
DNA replication proteins [BR:adn03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Alide_2685
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Alide_2685
DNA repair and recombination proteins [BR:adn03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Alide_2685
   NER (nucleotide excision repair)
    Other NER factors
     Alide_2685
   MMR (mismatch exicision repair)
    Other MMR factors
     Alide_2685
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ADV00417
UniProt: E8TTE3
LinkDB All DBs
Position
2777674..2778588
Genome map
AA seq 304 aa AA seqDB search
MRPTLPGPLEGGHAPWCVFRMNRLPILRWQLWILIVLGCMAAHAAPPSPTLARRYHTGID
VTAYWVSEKYDGVRALWTGRQLLSRQGLPIRAPAWFTAGWPAEPLDGELWAGRGRFDAAQ
AAVAAAAPDDAQWRALRYMVFDLPAAPGGFGARLPTLQHAVAALGQPWVQAAPQWRVATR
AQLMGQLREHEKAGAEGLMLRRDDAPYRGGRSEDLLKLKSFEDAEGLVVGHVPGRGKYAG
QTGALLVAMPGGRRFRLGSGQPDALRRQPPPVGSVVTYRFNGTHASGLPRFARFWRVRAD
EPLN
NT seq 915 nt NT seq  +upstreamnt  +downstreamnt
atgcgccccaccctcccaggcccgctcgaaggcggccatgctccttggtgcgtttttcgc
atgaatcgcttgcccatcctgcgctggcagctatggattttgatagtcctcggctgcatg
gcggcccacgccgcgccgccctcccccacgctggcgcggcgttatcacaccggcatcgac
gtcaccgcctactgggtcagcgagaagtacgacggcgtgcgcgcgctgtggaccggccgg
cagctgctgagccgccagggcctgccgatacgcgcgcccgcctggttcaccgcgggctgg
cctgccgagccgctggacggcgagctctgggccgggcgcggccggttcgacgccgcgcag
gcggccgtggcggcggccgcgcccgatgacgcgcagtggcgcgcactgcgctacatggtg
ttcgatctgccggccgcgcccggcggtttcggcgcgcgcctgcccaccctgcagcacgcg
gtggccgcgctgggccagccctgggtgcaggccgcgccgcagtggcgcgtggccacccgt
gcgcagctgatggggcagctgcgcgagcacgagaaggccggcgccgagggtctgatgctg
cgcagggacgatgcgccctaccgcggcgggcgcagcgaggatctgctcaagctcaagtcg
ttcgaggacgccgaaggcctggtcgtgggccacgttcccggccggggcaagtacgcgggg
cagacgggcgcgctgctggtcgccatgcccggcggacggcgcttccgcctgggcagcggc
cagcccgatgcactgcgccgccagccgccgcccgtgggctcggtggtgacctaccgcttc
aacggcacgcacgcaagcgggctgccgcgcttcgcgcgcttctggcgcgtgcgcgcggac
gagccgctcaattag

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