KEGG   Achromobacter denitrificans: APT56_19400Help
Entry
APT56_19400       CDS       T04244                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
adt  Achromobacter denitrificans
Pathway
adt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:adt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    APT56_19400 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:adt03400]
    APT56_19400 (ligD)
Enzymes [BR:adt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     APT56_19400 (ligD)
DNA repair and recombination proteins [BR:adt03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     APT56_19400 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ALX85184
LinkDB All DBs
Position
complement(4371607..4374264)
Genome map
AA seq 885 aa AA seqDB search
MADTLAKYRAKRDFKVTSEPAGGGEANEAARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPSYDPSVKRMAVQVEDHPIAYNRFEGEIPKGQYGAGKVIIWDRGTWSPVGDPAEGYE
RGHLKFDLHGVKLRGRWALIRMKGRGSEKQPPWLLVKDRDDYARAESEFSVVDEQPDSVV
SPAAGGRPVPAAAPSAMAPPDDPPPSGQLPGEPADLPRQLKPQLATLAEGVPSQARDDWL
YEMKFDGYRLLARLDHGEVRLYTRNGHDWAPKLPHLAAALRRMPLETAWLDGEIVMLADN
GAPSFQALQNAFDGERTSGILFYVFDLPYVTGRDLRGEPLRVRRAVLARVMEAAGGDPLR
FSDAFDAAPADLVASACKMGLEGIIAKRLSSPYVSRRSDSWIKLKCARRQEFVVVGYTDP
KGARVGLGALLLAYHDEAGELVYAGKVGTGFDDAGLAALRDRLAALETRRASVDARGIGR
GTHWVRPELVAEVSFGEWTESGHVRHPVFRGLRTDKPARAITREVAMDAETTRDAGARHG
RGNTAGKAARKRSATAAKNAAGATAGKGAGTAAGKTARKTMATSAQRARTATAAGKLTHP
ERVIDPSTGLTKLDLARYYGLVAPLLLRHLKDRPVSFLRAPAGIKGEFFFQKHLEAPMPG
VKALPQALDPHHPPLMELPTPQAIMSAAQMNVVEFHTWNAVKRAIGKPDRMVFDLDPGEG
VTWDAVRRGAQLLRVLLTEIGLRAWLKTSGGKGLHVVVPLRRQYDWDTVKAFSQAIVQHL
ARTLPQVFVAKSGPKNRVGRIFADYLRNGFGATTVAAWSARARPGMGVSVPLAWEELDEV
RASDQWTIANIHERLDVGDSPWDDYAPQALGAAMKALDFKPDSGG
NT seq 2658 nt NT seq  +upstreamnt  +downstreamnt
atggccgataccctggcgaagtaccgcgccaagcgcgacttcaaggtgacctcggagccg
gcgggcggcggcgaggccaacgaggccgcgcgcgccttcgtgatccagaagcactgggcc
agccgcctgcactacgacttccggctggaactggacggggccatgaagagctgggccgtg
cccaagggacccagctacgacccgtcggtcaagcgcatggcggtgcaggtcgaagaccat
cccatcgcctacaaccgcttcgagggcgagattccgaagggccagtacggcgccggcaag
gtcatcatctgggatcgcggcacctggtcgccggtgggcgatccggccgagggctacgag
cgcggccacctcaagttcgacctgcatggcgtcaagctgcgcgggcgctgggcgctgatc
cgcatgaaggggcggggatccgagaagcagccgccctggctgctggtgaaggaccgcgac
gactacgcccgcgccgaaagcgaattcagcgtggtggacgagcaacccgacagcgtggtg
tcgccagccgctggcgggcgcccggtgcccgccgccgccccatccgcgatggcgccgccc
gacgatccgccgccatccggccagctgccgggcgagccggccgacctgccgcggcagctc
aagccacagctggccacgctggcggaaggcgtgccgtcccaggcgcgggatgactggctg
tacgagatgaagttcgacggctaccggttgctggcgcggctggaccacggcgaggtgcgc
ctgtacacgcgcaacggccacgactgggcgccgaagctgccgcacctggcggcggcgctg
cggcgcatgcccttggaaaccgcatggctcgacggcgagatcgtgatgctggccgacaac
ggcgcgcccagcttccaggccttgcagaacgccttcgacggcgagcgcaccagcggcatc
ctgttctatgtgttcgacctgccttacgtgaccggccgcgatctgcgcggcgaaccgctg
cgggtgcgccgcgcggtgctggcgcgggtgatggaagccgcggggggcgaccccctgcgt
ttcagcgacgcgttcgacgcggccccggccgacctggtggcgtcggcctgcaagatgggg
ctggaaggcatcatcgccaagcgcctgtcgtcgccgtacgtatcgcggcgcagcgacagc
tggatcaagctcaagtgcgcgcggcggcaggagttcgtcgtggtcggctacaccgatccc
aagggggcgcgggtggggctgggcgcgctgctgctggcctatcacgacgaggccggcgaa
ctggtgtacgccggcaaggtgggcaccgggttcgacgacgccggactggccgcgctgcgg
gaccgcttggcggcgctggaaacacgccgggccagtgtcgacgcccgtggcatcggtcgc
ggcacgcactgggtgcggcccgagctggtggcggaagtgtcgttcggggagtggacggaa
tcgggccacgtgcgccatcccgtgttccgtgggctgcgcaccgacaagccggcgcgggcg
attaccagggaggtggcgatggacgcggagacgacgcgggacgccggggcgcggcatggc
cgcggcaacaccgcgggcaaggcggcccgcaagcgcagcgcgacagccgcgaagaatgcg
gctggcgcaacagccggcaaaggggccggaacggcggctggcaagacggcccgcaagact
atggccacgtcggcccagcgcgcaaggacggccaccgccgccggcaagctgacccatccc
gaacgcgtcatcgacccgtccaccggcttgaccaagctggacctggcccgctactacggc
ctggtggcgccgctgctgctgcgccacctgaaggaccggccggtgtcgttcctgcgcgcg
ccggcgggcatcaagggcgagttcttcttccagaagcacctggaggcgccgatgccgggc
gtgaaggcattgccgcaggccctggatccgcaccacccgcccttgatggaactgccgacg
ccgcaggcgatcatgtcggccgcgcagatgaacgtggtggagttccatacctggaacgcg
gtcaagcgcgccatcggcaagcccgaccgcatggtgttcgacctggacccgggcgagggc
gttacctgggacgcggtgcggcggggcgcgcaattgctgcgcgtgctgctgaccgagatc
ggcctgcgggcctggctcaagaccagcggcggcaagggcctgcacgtggtggtgccgctg
cgccggcaatacgactgggacacggtcaaggcgttctcgcaggctatcgtccagcatctg
gcgcgcacgctgccgcaggtgttcgtggccaagagcggtccgaagaaccgcgtcggccgg
atcttcgccgattacctgcgcaatggcttcggcgccaccacggtggcggcctggtcggcg
cgcgcgcggccggggatgggggtgtcggtgccgctggcgtgggaggaactggacgaggtc
cgggccagcgaccagtggaccatcgccaacatccatgagcgcctggatgtcggcgactcg
ccgtgggacgactacgccccgcaggcgcttggcgcggccatgaaggcgttggatttcaag
ccggattcgggcgggtag

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