Achromobacter denitrificans: APT56_24525
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Entry
APT56_24525 CDS
T04244
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
APT56_24525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adt03400
]
APT56_24525
Enzymes [BR:
adt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
APT56_24525
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
APT56_24525
DNA repair and recombination proteins [BR:
adt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
APT56_24525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
OrfB_Zn_ribbon
Auto_anti-p27
DZR
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALX86085
LinkDB
All DBs
Position
5477970..5478797
Genome browser
AA seq
275 aa
AA seq
DB search
MPELPEVETTRRGIDAVITGRPLARLVVHESRMRWPIPADLPDLVGGRTVLECGRRGKYL
LLRFDHGTQIVHLGMSGSLRSVAPGEFLRKHDHVEWIFDQAVLRLHDPRRFGAVLWHPDA
DGPVENHPLLAKLGIEPFDPRFDGAWLHRHFKNHGAAIKQVLLAGMAVVGVGNIYASESL
FRARINPKTPANKLSRARCDRLADMVRATLADALTSGGSTLRDYVGATGEPGAYFEIHAA
VYERAGQPCRVCGTPIKRIVQGQRATYYCPKCQKT
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcctgaagttgaaaccacgcgtcggggaatcgacgccgtcatcaccggc
cgccccctcgcgcggctggtcgtccacgagtcccggatgcgctggcccatcccggccgac
ctgcccgacctggtgggcgggcggaccgtgctggaatgcggccggcgcggcaaatacctg
ctgctgcgctttgaccacggcacccagatcgtgcacctgggcatgtccgggtcgctgcgc
agcgtggccccgggcgaattcctgcgcaagcacgaccacgtcgaatggatcttcgaccag
gccgtgttgcggctgcatgacccgcgccgcttcggcgccgtgctgtggcaccccgatgcg
gacggaccggtcgaaaaccacccgctgctggccaagctcggcatcgagccgttcgacccg
cgctttgacggcgcctggctgcaccgccacttcaagaaccacggcgccgcgatcaagcag
gtgctgctggccggcatggcggtggtcggcgtgggcaatatctacgcctccgaaagcctg
ttccgcgcccgcatcaatcccaagaccccggccaacaaactgtcgcgcgcccgctgcgac
cgcctggcggacatggtgcgcgccacccttgccgacgccctgacctccggcggcagcacc
ctgcgcgactacgtcggcgccaccggcgaaccgggcgcgtatttcgagatccacgcggcg
gtctacgagcgcgccggccagccctgccgggtctgcggcacgcccatcaagcgcatcgtc
cagggccagcgggccacctactactgcccgaagtgccagaagacctga
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