Arcobacter defluvii: ADFLV_0556
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Entry
ADFLV_0556 CDS
T06891
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
adz
Arcobacter defluvii
Pathway
adz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
adz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADFLV_0556 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adz03400
]
ADFLV_0556 (mfd)
Enzymes [BR:
adz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADFLV_0556 (mfd)
DNA repair and recombination proteins [BR:
adz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ADFLV_0556 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
SNF2-rel_dom
DUF6794
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
QKF76614
LinkDB
All DBs
Position
538182..541169
Genome browser
AA seq
995 aa
AA seq
DB search
MKNIYEFLKNLKDEKRLKECQLLIVNDDRQAQIASDIVSYLGFKPFLLADFRANFGDDLL
SFSEELHEITKTLGDYYSYKKQDKILISPIRTISYPLPKEKCFESFTINFVDTLHLEELK
SKLYNWGYYFVDIVTSEAEVSIRGDIIDICPLGSDFGYRVSLFDDEVESIRKFDIEDQKS
SKEEIESFSINPAFLALDEASFEEINEQVQTVSSDAFIKDIHSLGFWYLNDLGEYLPQNL
SSFITQEALEELDEVYVFEEKRINKDKFLLTPQIYNSKKYQEINPANVKEFISFHKDKKI
TIISGTEAKVKGYDLDLNDKNIKYVFDNQIINLVSDEEVIISLNKEIKKRRKKKVKLVLD
ELQYNDFVVHEKHGIGQYKGIEPVTVMGAKRDFVIVQYQGEDKLLIPVENIDLIDRYVAD
GNSYAVVDKLGKGSFAKLKEKVKDRLFAIANDIIKLAAARELVNGIKINTDKKILEDFPK
SAGFEYTKDQKRSIKEIFNDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQAIFV
CPTTLLATQHYHSIQKRLDSFGIRVAKLDGKTTAKEKTSIKKGLENGDIKLVIGTHSLLD
IKTSNLALVIIDEEHKFGVKQKEKLKHLREDVHIFSMSATPIPRTLNLALSKLKGMSSLL
TPPSERLGVRTYVKEYSEKLIKEIILREKRRGGQLFYVHNNIASIEAKKADIEAIAPNIK
IDIIHSQIKPENAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIADLH
QLRGRVGRSNKEGYCYYIVDDKKSITDDAVKRLVALESNSYLGSGTALAHQDLEIRGGGN
IIGEAQSGHIKQIGYGLYLKMLEDALASLSGDDKPEKKSVDIKLAISAYISDDYIHEDRV
RLELYRRLSKATDIQEVYSIEEEMEDRFGKPDVVTKQFIELIIIKILALKLGIQTISSYE
MNITFTKADDTKESIKSPSKDDDDIINTTLKYLRK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatatttatgaatttttaaaaaatttaaaagatgaaaaacgactaaaagagtgc
caacttttaattgtaaatgatgatagacaagctcaaatagcttctgatatagtttcttac
ttaggatttaaaccttttttattagctgattttagagcaaattttggagatgatttactc
tcttttagtgaagaattacatgaaataactaaaactttaggtgattattattcatataaa
aaacaagataaaatattaatttctccaatacgaactatctcttatcctcttccaaaagaa
aaatgttttgaaagttttacaataaattttgtagatactttacatttagaagaattaaaa
tcaaaactttacaattggggatattattttgtagatattgtaacaagtgaagcagaagta
tcaattcgtggtgatattattgatatttgtccacttggaagtgattttggatatcgggtg
agtttatttgatgatgaagttgaaagtattagaaaattcgatattgaagaccaaaagtct
tctaaagaagagattgaaagtttttctataaatcctgcatttttagcacttgatgaagca
tcttttgaagagataaatgaacaagttcaaacagtatcaagtgatgcttttataaaagat
attcactctttaggattttggtatttaaatgatttaggtgaatatttacctcaaaattta
agttcatttatcactcaagaagctttagaagagttagatgaagtttatgtttttgaagaa
aaaagaataaataaagataaatttttattaactccacaaatttataatagtaaaaagtat
caagagataaatccagcaaatgtaaaagagtttatctcttttcataaagataaaaaaatc
actattatttcaggaactgaagccaaagtaaaaggttatgatttagatttaaatgataaa
aatatcaaatatgtttttgataatcaaatcataaatcttgtaagtgatgaagaagtcata
atctctttaaataaagagataaaaaaacgaagaaagaaaaaagtaaaacttgtacttgat
gaacttcaatacaatgattttgtagtacatgaaaaacatggtattggtcaatacaaagga
attgaacctgttactgttatgggggctaaaagagattttgttattgttcaatatcaaggt
gaagataaacttttaattcctgttgaaaatatcgatttaatagatagatatgttgctgat
ggaaactcttatgcagttgttgataaacttggtaagggaagctttgcaaaactaaaagaa
aaagtcaaagatagactttttgcaattgcaaatgatattataaaacttgcagctgcaaga
gaacttgtaaatggtataaaaatcaatacagataaaaaaattcttgaagattttccaaaa
agtgctggatttgaatatacaaaagaccaaaaaagaagtatcaaagagatatttaatgat
ttaagtagtggtcgagttatggatagacttctttcaggtgatgttggttttggaaaaaca
gaagttgctatgaatgcattattagcagttattttagatggttatcaagcaatatttgta
tgccctacaacacttcttgcaacgcaacactatcatagtattcaaaaaagacttgatagt
tttggaataagagttgctaaacttgatggaaaaacaacagccaaagagaaaacaagtatt
aaaaaaggtttagaaaacggtgatataaaacttgttattggaactcactctttacttgat
ataaaaacttctaatttagctttagttatcatcgatgaagagcataaatttggtgtaaaa
caaaaagaaaaattaaaacatttaagagaagatgtacatattttttctatgagtgcaact
ccaatcccaagaactctaaatctagctttatcaaaactaaaaggtatgagttcacttcta
acacctccaagtgaaagactaggtgttagaacttatgtaaaagagtatagtgaaaaacta
atcaaagagataatcttaagagaaaaaagaagaggtggacaactattttatgttcacaat
aatatagcttcaattgaagcaaaaaaagctgatattgaagctattgctccaaatatcaaa
atagatattattcactctcaaataaaacctgaaaatgctgaaaaaattatcgaagccttt
gaaaataaagagttcgatattttacttgcaacttcaatagttgaatcaggaatccatttg
ccaaatgcaaattcaatcataattgatggtgcagatagatttggaattgcagatttacat
cagcttcgaggaagagttggacgaagtaataaagaaggatattgttactacatagttgat
gataaaaaatcaataactgatgatgctgtaaaaagacttgttgcccttgaatcaaactca
tacttaggaagtggaacagccttagctcaccaagatttagaaatcagaggtggtggaaat
atcataggcgaagcccaaagtggacatataaaacaaataggatatggtttatatttaaaa
atgttagaagatgcacttgctagtcttagtggagatgataaaccagagaaaaaatcagtt
gatattaagttagcaatttctgcttatattagtgatgattatatccatgaagatagagta
agacttgaactttatagaagattgagtaaggcaactgatattcaagaggtttatagtatc
gaagaagagatggaagatagatttggaaaacctgatgttgtaacaaaacagtttatagag
ttaattatcataaaaattttagctttaaaacttggaattcaaacaattagttcatatgaa
atgaatattacattcacaaaagctgatgatacaaaagagagtataaaatcaccaagtaaa
gatgatgacgatattataaatacaactttgaagtatttgagaaagtaa
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