Acromyrmex echinatior (Panamanian leafcutter ant): 105146142
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Entry
105146142 CDS
T03917
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105146142
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aec00536
]
105146142
Glycosaminoglycan binding proteins [BR:
aec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105146142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
105146142
NCBI-ProteinID:
XP_011054521
UniProt:
F4WK47
LinkDB
All DBs
Position
Unknown
AA seq
1700 aa
AA seq
DB search
MRLLDHTRGQWRTLRSTWIMLLVHSLFLMVLILSGLQRNVVNAALQDASKNVTDIIEAMG
MQEQLFGVRRTESRCRDDTIAYDIMEAAILMTPTNVLFPAGIPQDFSILVVAKPRANEST
FKDYSTSVLFTIYGDSGEEQLILSLGRDIKFFYSTNPDDRNEPISFDIDISDGQWHRLGV
SIKGDAVTIILDCNRHITKKLRRNVEKTIAGILMIGQQLKGDLYLGSLEMLKIALNPDAA
YEICTTFAPDCERESKYGLNYNSSFNEDDYEEENESDPDEDDNRDFLPHGTTTITNTINV
LTSAAKNSTSYEVEITTMANAESNHQQNYGESTNNPYDEEYIKHYNTRGSPGLRGFPGPP
GVPGPPGEKGEPGRDGLPGLSGVSGPPGNVFVIPSLNQQGNEKGPDSQAEMLRQMISQHM
LAMRGIEGPMGLTGVPGQDGPPGPQGQKGEPGEIGEPRLRGDQGSPGNPGREGRRGRPGR
DGERGLNGPPGMKGEQGQIGLPGLPGDKGERGSSGKPGESGLPGHEGMQGEDGPPGLPGL
PGELGPRGFIGSRGFPGLPGNPGIPGNEGPPGIKGNVGPLGPPGAPGQSGPTGSIGSPGP
QGPPGPIGLVGPQGKPGIPGLSGADGSPGLPGNPGIPGTKGEQGPLGLQGPVGFPGVRGV
KGDEGQRGLAGERGEKGDRGLEGKKGDTGTKGEPGAIGPQGMPGLEGLEGPKGFEGLRGE
TGPAGLSGEKGKVGLPGYAGYPGNPGDKGNKGQLGNQGASGDKGERGNSGLQGERGTTGP
RGFRGTRGRRGAEGLPGPKGDTGQPGPAGPSGEIGPPGVEGPRGFAGPSGPPGLDGKDGV
PGPPGERGPTGESGSPGPPGIPGVIGLPGPPGELGQPGEPGASGSPGAPGEIGLPGEQGK
EGPPGPSGLTGLKGSPGPGGLPGFPGERGLSGLPGLPGLKGEMGPIGAQGPPGNKGIQGE
PGKDGSPGPEGKQGHKGDMGSIGLKGEKGDSGPVGPVGRDGLPGQRGLSGPPGPVGFPGE
DGDKGNVGPPGEKGFKGSQGDVGFPGPQGIQGPRGESGLVGPPGEKGPPGEIGQRGPKGE
VGPVGATGSAGSVGPSGLPGQPGVKGEVGDPGTIGPIGPLGIPGERGPRGSKGLKGTEGP
TGPEGRQGEKGDDGMLGPPGKAGLEGKQGERGLPGIKGEEGKLGLLGLPGLRGLIGPEGA
KGDVGLPGLPGPPGEPGLMGTKGEPGKDGEDGRIGDPGISGEAGLPGKEGLPGPPGKSGP
EGPAGQQGNTGLPGEKGDIGLPGALGFEGPVGLQGPSGLPGLPGERGLPGAAGENGIVGM
PGAAGAPGIIGPIGSKGQKGDKGRRGIKGYRGESGLIGIKGDHGKRGEKGDRGFPGTQGF
KGNPGHPGQVGPRGEQGFVGLPGPPGSPGLKGNAGNDGMRGDVGPAGPPGPPGPSGLSIG
QSDFDRIIPPIYRDQVRRKRDAFEDVDEEEIFDKKLSDINKAFYNIQQELYLMRKPIGTR
NNPARTCRDLFYGHPDFKNGWYWIDPNLGMPDDAISVICNITNMGETCIFPDIHSSHMPS
IPWRKENNKTDWYSHLRGGFRISYETIGVVQMNFLRLLSQEAYQNFTYTCTNSVAWYDGE
NRSYNLSLRLLGDNGDEFSYNNIRPHLIADECKSRSDKEETVFLIRTSKLQQLPLIDFYP
VDYGLPQQAFGFKVGPVCFK
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgcggctattggatcatacgagagggcaatggagaacgctgcgatccacgtggatcatg
cttcttgtacattcattgtttttgatggtgctcatcctatccggtttgcagcgaaacgta
gtaaatgctgcgctgcaagatgcatcgaagaatgtgactgatataattgaagctatgggg
atgcaagagcaacttttcggagtgagaagaacggaaagtcgttgcagagatgatacaatc
gcgtatgatattatggaagctgcgattctgatgactcctaccaatgtattatttccggcc
ggtataccacaagatttttctatcttggttgttgcaaagccgagagctaacgagtcaacg
ttcaaagattattccacgtcggtactttttactatctacggtgacagtggcgaagaacag
ttaattctttcgttggggcgcgacattaaatttttctacagcacaaatccggatgacaga
aatgaacctatttcttttgatatcgatatttctgacggacaatggcatcgattgggagtt
agtattaagggagatgccgttacaattattctcgattgcaatagacatattacgaaaaaa
ttgcggaggaatgtggagaaaacaatcgctggcatccttatgattggacagcaacttaag
ggcgatttatatctgggaagtcttgagatgctgaaaattgctctaaatccagacgctgct
tatgaaatctgtacaacgtttgcgccagattgcgaacgtgaatcaaaatatggactgaat
tataattcatctttcaacgaagatgattacgaagaagaaaacgagagtgacccagatgaa
gatgataaccgggattttctacctcatggcacaacaacaataacaaatacaattaacgtt
ttgacatcagcggcaaagaattctacatcttacgaagtggaaataacgacgatggcgaat
gcggaatcaaatcatcagcagaattatggagaatcgacaaataacccttacgacgaagaa
tatataaagcattataatacccgaggttcacctgggcttcgtgggtttcctgggccgcca
ggagtacccggccctcctggcgagaagggcgaacccggacgagatggattgcccggattg
tcaggtgtatctggtccgccaggtaacgtcttcgtgataccctcgttgaatcaacagggc
aacgaaaagggaccggattctcaggcagaaatgttgcggcagatgatatcacaacacatg
cttgcaatgagaggtatagaaggcccgatgggccttacaggtgtcccaggtcaagatgga
ccgcctgggcctcaaggtcagaagggagaacctggtgaaatcggcgaacctagacttaga
ggggaccaaggaagtcctggaaatcctggcagagaaggtaggagaggtcgtcccggcaga
gacggcgaacgcggtctcaatggaccaccaggaatgaaaggagagcaagggcaaatagga
ttaccaggtctaccaggtgataaaggcgaacggggatcctcaggtaaacctggtgaatca
ggtttgcctggtcatgaaggaatgcagggtgaggacggtcctccaggtttaccaggtcta
cccggtgaattgggtccgagagggtttattggatcaagaggttttcctggattaccaggt
aatcccggtattcctggaaacgaagggccacccggtattaaaggtaatgttggcccactc
ggtccacctggtgcaccgggacaatcaggacctacaggttcaataggatcacctggacct
caaggtccaccagggccgataggtttagttggtccacaaggaaagccaggaattcctggt
ctttcgggtgctgatggatctcctggacttccaggcaatcctggaatcccagggacaaag
ggcgagcaaggtccattgggtttacagggtccggtgggatttccgggtgttcgaggtgta
aagggcgatgagggacaacgtggtctagcgggtgaacgcggtgaaaaaggtgatagaggt
ttggaaggcaaaaagggcgataccggaacgaaaggagagcccggagcaataggtccgcag
ggcatgcctggccttgaaggtttagaagggccgaaaggttttgagggacttcgtggtgag
actgggcccgctggtttgtctggagaaaaaggaaaggtaggcctaccaggatacgctgga
taccctggaaatcctggagataaagggaacaaagggcaactaggaaatcaaggagcaagc
ggcgataaaggagaaagaggaaacagtggattacaaggagaacgaggtacaacgggccca
cggggttttagaggaactcgtggaagaagaggtgcggaagggttaccaggaccaaaaggc
gacactggtcagccgggccccgctggaccgtcaggagagatcgggcctcctggtgttgaa
ggtccacgtggattcgcgggaccatcgggtccaccgggtctcgatggaaaagacggtgta
ccaggtccgcccggtgagcgtggtccaactggtgaatcaggatctccaggacctccggga
attcccggtgttattggtcttccaggaccacctggagaacttggtcaaccaggtgaacct
ggagcatctggcagtccgggggctccgggtgaaatcggtttaccgggtgaacaagggaaa
gaagggccgccgggtccatccggcttaacaggacttaaaggatcaccgggtcctggcgga
ttaccaggatttccaggtgaaagaggtctgagcggtttaccgggattgcctggcttgaag
ggtgaaatgggacctatcggagctcaaggaccgcccggtaacaagggtattcaaggagaa
cccggaaaagacggatcaccaggtccagaagggaaacaaggacacaaaggagatatgggt
tccatcggcctcaaaggcgaaaaaggtgactctgggccagttggacctgtaggtcgtgat
ggtctaccgggccaacggggtttatcaggtccacccggaccagttggttttcctggcgaa
gacggcgataaaggaaacgtaggtccacctggtgaaaaaggattcaaaggatctcaaggg
gacgtgggttttccaggtccgcaaggaatacaaggaccacgtggtgaatctggtttagta
ggtcctccaggagagaaaggaccaccgggtgagattggacagcgagggccaaaaggcgaa
gtcggtccggtcggagcaactggatctgctggatctgtaggaccgagtggtttaccaggt
caaccaggtgtaaaaggtgaagttggagatcctggaactattggtcctataggtccttta
ggaattccgggagagcgagggccaagagggtccaagggtcttaagggtacagaaggtccg
acgggtccggagggtcgtcaaggtgaaaaaggagatgatggaatgctaggacctcccgga
aaggcaggactagagggaaaacagggagaaagaggtctaccaggaataaaaggagaagaa
ggtaaattaggacttcttggacttcctggactacgaggattaattggtcccgagggagca
aaaggtgatgttggattacctggtcttcctggtccgcctggtgaacccggtctcatgggc
acgaaaggcgagcctggaaaggatggcgaggatggacgaataggtgatcctggcatatca
ggcgaagctggactacctggcaaggaaggattaccgggtcctcctggaaaatcaggtcca
gaaggacctgcgggtcagcaaggtaatacaggtttgccaggagagaaaggagatatcggt
ctccctggagcactgggttttgaaggacctgtcggacttcaaggtccttccggtttgcct
ggcttaccaggcgaaagaggtttgccaggcgcggctggggaaaatggtattgtgggtatg
cccggagctgctggagctcctgggattattggaccgattggttcaaaaggccagaaaggt
gataaaggtcgtagaggaattaaaggatatcgaggcgaatcgggactgattggaattaaa
ggcgatcatggaaagcggggagaaaaaggtgatcgcggatttcctgggacacaaggattt
aaaggaaatcctggacatcctggtcaagttggacctagaggagaacaaggatttgttggt
ctacctggaccaccgggatcgcctgggctaaaaggtaatgctggaaatgacgggatgcga
ggtgacgtaggtccggctggtccgccaggcccaccaggaccgtctggtttgtcaatagga
cagtccgattttgacagaataataccaccgatatatcgtgaccaagtcagaagaaaacgt
gatgcttttgaggacgtcgatgaagaggagatatttgacaagaagctttcagacataaat
aaggctttttataacatacaacaggaattgtatttaatgcgtaagccaattggtaccaga
aataatccggcgaggacatgcagagatttattttatggacatcctgattttaagaatggt
tggtactggatcgatccaaatttgggcatgccagacgacgctattagtgtgatttgtaat
atcacgaacatgggtgaaacttgtatttttccagacattcatagtagtcacatgccgagc
ataccgtggaggaaagaaaacaataaaaccgactggtactcgcatttacgtggaggattc
agaataagttacgagacaatcggagttgtgcagatgaacttcctacgtctacttagtcaa
gaagcttatcagaattttacgtatacgtgcacgaacagcgttgcctggtacgatggcgag
aatcgcagttacaatctttcgctgcgattactcggtgacaatggggatgaattctcgtat
aacaatatcaggcctcacctcatcgcggacgagtgcaagagtcgaagtgataaggaggag
accgtgttcttaattcgcaccagcaaattacagcagctaccgctgatcgatttttatcca
gttgattacggattaccacaacaagctttcggcttcaaagtcggtccagtttgtttcaaa
tag
DBGET
integrated database retrieval system
