Acinetobacter equi: AOY20_12055
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Entry
AOY20_12055 CDS
T04103
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aei
Acinetobacter equi
Pathway
aei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOY20_12055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aei03400
]
AOY20_12055
Enzymes [BR:
aei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOY20_12055
DNA repair and recombination proteins [BR:
aei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOY20_12055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ALH96208
UniProt:
A0A0N9VFS0
LinkDB
All DBs
Position
complement(2539667..2543128)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQEEISKLDLDRLKAGEKRWIGNLQGSAAALLFKEISEHSKKLFVIVARNNQHLSQLES
EFEFYGLKPTIFPDWEILPYDRLSPHQDIVSERLAILSNIPQNGVLLVSASTIAQRVAPV
SWVLGEHFDIQVGQKFALEQQKQRLIQAGYHLVDTVYDHGEFAVRGSIVDIYASGQQAPI
RIDLFDDEVETLKFFDPETQRTIEPLNHFKVLPAKEFPLKEGRSVFRNRYADMFPTANPK
KNSIYQDVLDGIASPGIEFYLPLFFEEDAMESQSSLFSYLPNHSIVITDRHLDDELASYW
KEIQRRYEDRRHNIDQPLLAPEYLFIPPNSVLEKLNQFGRCISSSQIFDEKAGVLNVVTE
APPRLAVEPKQEQPFSAVKDYIDTANFPVLLVAESAGRRETLRDVLRASLGEIPIVENFQ
NFLQSSYSIAITNAPLDRGLVLLDKLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDYGVGRYAGLITLSIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDVWSKAKRKALEQIHDVAAELLHIQARRQAKPGFGFEIDEKLYMQFAS
GFAYEETLDQANAIEATLYDMQKAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSSKSHTKIIEDLVDGKVDIVIGTHKILQ
ENIQFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEQTGDSVKEAILRELLRGGQVYFLHNEVETIERTAESLRELVPE
ARVAVAHGQMREKELEQAMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDAITRASALGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDHIRMELIDRFGIPPEPVKQLFAVHQIRLKAEQLGI
TKIDISSHGGYIEFSPDTPVQAMTIIQMMQKQPTYFRMDGGQRLKIMVMLEDYLKRIQFI
NDILGQLLKDMRA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagaagaaatttctaagttagatctagatcgattaaaagctggtgaaaaacgc
tggattggtaatttacaaggttcagcggctgctttactttttaaggaaatcagtgagcat
tcaaaaaagctctttgttattgttgctaggaataatcagcatttaagtcaattagaaagt
gaatttgaattttatggtttaaagccgaccattttccctgattgggagattcttccatat
gatcgcttatctccacatcaagacattgtgtcagagcgtttagcaatactttcaaatata
cctcaaaatggcgttttattagtttcagcatcaacaatagctcagcgtgtggcacctgtt
tcttgggtattaggtgaacattttgatatacaggtcggtcaaaaatttgcattagaacaa
caaaaacaacgattaattcaagcaggataccatttagtcgatacagtttatgatcatggt
gaatttgctgttcgtggtagtattgtagatatttatgcttcaggacagcaagcaccaatc
cgtatagatttatttgatgatgaagttgaaactttaaaattttttgatccagaaactcaa
aggacaatagagcctttaaatcattttaaagtgttaccagcaaaagaatttccattaaaa
gaagggcgttcagtatttcgtaatcgttatgctgatatgtttccaacagcaaatccgaaa
aaaaattcaatttatcaggatgttttagatggaattgcatcaccaggaatagagttttat
ttgcctctattttttgaagaggatgcaatggaaagtcagagctctttattttcgtactta
ccaaatcattccattgtaattacagataggcacttagacgatgaattggcaagttattgg
aaagaaattcaaagaagatatgaagatagacgccataatattgatcagccattattagct
ccagaatatttatttatcccaccaaattctgttctagagaaattaaatcaatttggtcgc
tgtatttcatcatcacaaatatttgatgaaaaggcaggtgtattaaatgtcgttacagaa
gctccacctcgtttagctgtagaaccaaaacaagaacagcctttttctgcagttaaagat
tatattgatacagcaaattttcctgtgcttctagttgctgaaagcgcgggtcgtagagaa
acattacgtgatgttttaagagcaagtttaggtgagattccaattgtagaaaattttcaa
aattttttacaatcatcatattcaattgcaattacaaatgcacctttagatcgtggatta
gtacttcttgataagttaagtgttatttcagaaaaccagttatatgaacatcgtgttgta
caacgtcgtcggaaacgtcagcaagaggtttctgaagagttcttaattcgaagtttaact
gagcttagtattggtgcacctgttgtacatattgattatggtgttggtcgctatgcggga
ttaattacattaagtattgatgatcaagatcatgaatttcttcagttagattatgccgat
gctgcaaaagtatatgttcctgtaactaacttacatttaattagtcgttatagtggtgga
gatcctgatttagcaccattacataagttgggaactgatgtatggagcaaagcaaaacga
aaagctttagagcaaattcatgatgttgctgcagagttattgcatattcaagcacgcaga
caagcaaagccaggattcggttttgaaatagatgaaaagctgtatatgcaatttgcgtct
ggattcgcttatgaagaaactttggatcaggccaatgctattgaagcaactttatatgat
atgcaaaaagcaaaaccaatggaccgtttggtgtgtggtgatgttggttttggtaaaact
gaagttgcaatgcgagcagcatttgtagctgtacaaaataataaacaagttgctgttctt
gtgccaacaacattattagcgcagcaacattatgaatcatttaaagatcgcttcgcagat
tggcctatacgtatagaagttttatctcggtttggttcttcaaaatctcatacaaaaatc
attgaagatcttgttgatggtaaggtagatattgtgattggtacgcataaaattttacaa
gaaaatatacagtttaaaaacttaggattaatgattgtagatgaagaacaccgttttggt
gtgcgagataaagagcgtatcaaagcaatgcgtgctgatgttgatatgttgacattaaca
gcaactccgatacctcgcaccttaaatatggcatttagtggtatgcgtgatttatctatt
attgcaacaccaccagctcgtcgtttggctgttaaaacttttgtacaagagcaaactggt
gattctgtaaaagaggcaattttgcgtgagttattacgcggtggacaggtttatttcttg
cataatgaagttgaaacaattgaacgtacagctgagtcattgcgcgagttagttcctgaa
gctcgtgttgctgttgctcatgggcaaatgcgtgaaaaagagttagaacaagccatgcaa
cagttttaccataaagaatataatgttttggtttgttcaacaattattgaaacaggtatt
gatgttcctaatgcgaatacaattattattgaacgagcagataaattggggcttgcacaa
ttgcatcaattgcgcggtcgtgtaggacgttcgcatcatcaagcatatgcatatttactt
gtgccttcaattaaaggtttaaaaggcgatgcagaaaaacgcttagatgcgattactcga
gcttcagctttaggtgcaggttttatgttagcaactgaagatttggaaattcgtggagca
ggtgagttgttgggtgagcaacaaagtggctctatgcaagcaattggttatagtttatat
atggaaatgcttgaaaaagcgactaaagcaattcaaaaaggaaaaacgccaaattttgat
gcaccattgtcgttaactgcagaaattaatttgcatatgcctgcacttattccagatgac
tatttgggtgatgtgcatcagcgattattgttttataaacgtattagtaatacagacaca
caagaaaaactagatcatattcgcatggaattaatcgatcgatttggtatacctccagaa
cctgttaaacagttatttgcggtgcatcaaattcgtttgaaagcagagcaattgggtatt
acgaaaattgatattagttctcatggtggttatattgagttttcaccagatacacccgtg
caagctatgactattattcagatgatgcaaaaacagccaacctattttagaatggatggt
ggtcagcgcttaaaaatcatggtgatgttagaggattatctgaagagaattcaattcatt
aatgatatattaggtcaattgctgaaggatatgcgtgcttaa
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integrated database retrieval system
