Asticcacaulis excentricus: Astex_3490
Help
Entry
Astex_3490 CDS
T01378
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aex
Asticcacaulis excentricus
Pathway
aex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Astex_3490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aex03019
]
Astex_3490
03016 Transfer RNA biogenesis [BR:
aex03016
]
Astex_3490
Enzymes [BR:
aex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Astex_3490
Messenger RNA biogenesis [BR:
aex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Astex_3490
Transfer RNA biogenesis [BR:
aex03016
]
Prokaryotic type
tRNA degradation factors
Astex_3490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
HTH_12
Motif
Other DBs
NCBI-ProteinID:
ADU15122
UniProt:
E8RUJ7
LinkDB
All DBs
Position
2:complement(1278037..1280382)
Genome browser
AA seq
781 aa
AA seq
DB search
MKTPSTPHAASGLPDDDTLLDVLKSARELDVGALAKQFGLKGEDRRALRQRLKQLADSGK
LNKSGRKSFGAVGALPETGVAEVVERDIDGDLWVKWGKSDDPKLKHKPPLARLAPLKKAI
AQTPPAVGDRIYVRFEQTSEEWIAHLVKVLDQGAPKLVGVVRIGKARKGPRDIRIESVDR
KSKDSYTLVAGAIDALEDGDVVIAAAQGGNHRYGPKPAKLIEVIGKEDSPRIASIMAIHA
HGLKVGFDSSTEAEAEAAQAPDLKGREDLRHLPLITIDPQDARDHDDAVYAHADDDASNP
GGHVVWVAIADVAHYVKSGSSLDRDAREKGNSTYFPDRVEPMLPHVLSSGLCSLQEGENR
ATLAVRMVFDAEGKKIGHQFVRGLMRSAAKLSYEQAQAAIDGTPDDKTQPILDTLLKPLW
AAHACLSRGRRERQPLAINSPERKVQLDSEGDVVAITARVSLEAHQLIEEIMIQANVCAA
ETLEKHKTPLIYRVHEQPSLEKVGNLADFLATIGLPWNKGEPPRTERFNQLLNSQKEGPH
AEIINEVVLRTQMQAHYSAENFGHFGLNLDRYAHFTSPIRRYADLIVHRALIRALKLGDD
GLTDYEVKTMADTAEHITATERRSMQAEREAIERYVAAFLEDKVGASFEGRIVGVTRFGL
FVKLTETGADGIIPASSFVDDYYIHDDTAHALVGERHHRRWTLGRKIEVQLLEAMPMTGG
LVFKALSEPEAPDPNAPRPRLGVRSRVDTALRRKGPGGPKSGKVRQKGITEKSKTKKGKR
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaccctctacgccccacgccgcctctggtttgccggatgacgacaccctctta
gatgtcctgaaatctgcccgtgagctggatgtcggcgccctggccaagcagttcggcctc
aagggcgaagaccgccgcgccctgcgccaaaggctcaaacagctggccgactctggcaag
ctgaacaagagtgggcgcaagtcgttcggggccgtcggcgccctacccgaaaccggcgtc
gccgaggtggtcgagcgcgacatcgacggcgatttgtgggtcaaatggggcaagtctgat
gacccgaagctgaaacacaagccgcctctggcccgcctcgccccgctgaaaaaagccatt
gcccagacgccgccggccgtcggcgaccgcatctatgtgcgctttgagcagacctctgag
gagtggatcgcccacctcgtcaaggtgctggatcagggcgcgcccaagctggtcggtgtt
gtgcgtatcggtaaggcgcgcaagggcccgcgcgacatccgcatcgaaagcgtcgatcgc
aaatcgaaggacagctataccctcgtcgccggggccatcgacgccctcgaagacggcgat
gtcgtgatcgccgcggcgcaaggaggcaaccaccggtatggccccaagcccgccaagctg
atcgaggtgatcggcaaggaagactccccgcgcatcgcctcgatcatggccatccatgcc
cacgggttgaaggtcggctttgactcgtcgactgaggccgaggccgaggccgcgcaggcc
ccggaccttaaagggcgcgaagacctgcgccacctgccgctgatcaccattgacccgcag
gacgcccgcgaccacgacgacgccgtctatgcccatgccgacgatgacgccagcaatccc
ggcggccatgtggtgtgggtcgctattgccgacgtggcccactacgttaaatcgggttca
tcgctggaccgcgacgcccgcgaaaagggcaattcgacctacttccccgaccgggtggag
cccatgctgccgcacgtgctgtcgtcgggcctgtgctcgcttcaggaaggcgagaaccgc
gcgactttggccgtgcgtatggttttcgatgccgaaggcaagaagatcggccatcagttt
gtgcgcggcttgatgcgctccgccgccaagctctcctatgagcaggcccaggcggcgatc
gacgggacgcccgatgacaagacacagccgattctcgacaccctcctgaagcccttgtgg
gcggcgcacgcctgcctgagccgcggccggcgcgagcggcagcctctggccatcaactcg
cctgagcgtaaagtgcagctcgattccgagggcgatgtcgttgccatcaccgcccgcgtc
agccttgaggcacatcagctcatcgaagagataatgattcaggccaatgtctgcgccgcc
gaaacgctggaaaagcacaagacgccgctgatctatcgcgtgcacgagcagccgagcctc
gaaaaggtcggcaatctggccgattttctggccaccatcggcctgccgtggaacaagggc
gagccaccgcgcaccgaacgcttcaatcagttgctaaacagccagaaggaagggccgcac
gccgaaatcatcaatgaggtcgtgctacgcacccagatgcaggcccattacagcgccgaa
aatttcggccacttcgggctcaatctcgaccgctatgcccacttcacctcgccgatccgc
cgctatgccgacctgatcgtgcaccgcgccctgatccgcgcgttaaagctgggggacgac
ggcctgaccgattatgaggtcaagaccatggccgacacggccgagcacattacggcaacc
gagcggcgctcgatgcaggccgaacgcgaggccatagagcgctatgtggcggccttccta
gaagacaaggtgggcgcatcgttcgaaggccgcatcgtcggcgtcacacggtttggcctg
ttcgtcaagctgaccgagacgggggcagacggcatcatcccggcctcgtcattcgtggat
gactactacatccatgacgacacggcccacgcgctggtgggggaacgccatcaccgccgc
tggacgctggggcgtaagatcgaggtgcagctgctggaggccatgccgatgactggcgga
ctggtcttcaaggccctgtccgaacctgaagcccccgatcccaacgctccgcgtccgcgt
ctgggcgtgcgctcgcgagtcgatacggcgctgcgccgcaaagggccgggcggtcccaaa
tcgggcaaagtgcgccagaagggcattaccgaaaaatcgaagaccaagaagggcaaacgg
cggtaa
DBGET
integrated database retrieval system
