Acidithiobacillus ferrooxidans ATCC 53993: Lferr_0491
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Entry
Lferr_0491 CDS
T00758
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afe
Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lferr_0491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afe03021
]
Lferr_0491
03400 DNA repair and recombination proteins [BR:
afe03400
]
Lferr_0491
Enzymes [BR:
afe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lferr_0491
Transcription machinery [BR:
afe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lferr_0491
DNA repair and recombination proteins [BR:
afe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lferr_0491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACH82745
LinkDB
All DBs
Position
462607..466770
Genome browser
AA seq
1387 aa
AA seq
DB search
MDALKDLLKLFKQNDQQEEFDAIRIGIASPDKVRSWSFGEVKKPETINYRTFKPEREGLF
CAKIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQARVRRERMGHIELASPVAHIWFL
KSLPSRMGMILDMPLRDIERVLYFEAYVVVDPGVTALERGNILTEDQYLDALEEHGDEFA
AKMGAEGIRDLLRGIPLTQEIEQIRNELRESNSDTKTKKLSKRLKILEAFEQSGNRPEWM
IMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKR
MLQEAVDALLDNGRRGRAISGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELRLHQCGLPKKMALELFKPFIFNKLEERGLATTIKAAKRLVEQEKPEVWDILEEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLSLEAQ
LEARTLMMSTNNILSPANGEPVIVPSQDIVLGLYYVSQERADAKGTGGVFADAAEVRRAY
ETGNLGLHARITVRFRGERIDTTAGRALLGDILPEGLPFSVINRVLKKKVIGELINTCYR
RLGIKDTVIFADQLMYTGFRMATRAGISFGAGDMVTPLEKEGILARSEDEVKAIQAQYTS
GLVTEGERYNKVVDIWSRATDEVAKAMMDRVSKDTVYLPDGSSVQQDSFNSIFMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT
ANSGYLTRRLVDVTQDLVVVETDCGSEEGLPMTSLVEGGEIIEPLRDRVLGRVVAEDVVH
PNTGEIVIPRNTLLTERHLSQLDELGVDALKVRSPLTCRSRHGVCALCYGRDLARGHLVN
AGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAQSSIDIKQGGVFRYQPNLRLVTHS
SGRHVVVGRNGEVTVTDEQGREKERYKVPYGATILVDDNAAVTAGRRVAEWDPHTRPIVS
EVGGKISLKDAVEGASVAIQTDEITGLSTLVVIDAKQRPPQGRDLRPVISLLDEHGQDLK
LPGTDLPARYFLPAKAIIAVHEGMEIHPGDILARLPVGTTKTRDITGGLPRVAELFEARR
PKDFAVIAEHEGIIGFGKDTKGKQRLIITDESGEQHEYLIPKGRHVTVYEGERVSPGEQL
VEGQPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRRVEVTSSG
DSTFIPGDQVDRARVEDENIALEAAGKELPRFTPMLLGITKASLSTESFISAASFQETTR
VLTEAAVSGKVDDLRGLKENVIVGRLIPAGTGLAYHEHRRRLNRGEPVLSLETAVPRDMP
VSVSDTP
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgttgaaagacttactgaagctcttcaaacaaaacgatcagcaggaagaattc
gatgcgattcggatcggtatcgcgtctccggataaggtgcggtcatggtctttcggtgag
gtaaaaaagcccgagacgattaattaccggaccttcaaaccggaacgcgaaggtttgttc
tgtgccaagatctttggaccgatcaaagactacgagtgcctctgcggcaagtacaagcgc
ctgaaacaccgcggtgtggtctgcgaaaaatgcggtgttgaggtaacccaggcgagggtc
cgccgcgagcggatgggacacattgaactcgccagtcctgtcgcccacatctggttcctc
aaatctctgccgagtcgtatgggcatgattctcgatatgcccctgcgtgatatcgagcgg
gtcctctatttcgaagcgtatgtggtcgttgatccgggggtgaccgcgctggaacgcggg
aacatccttaccgaagaccagtacctggacgccctggaagagcatggggatgagtttgca
gcaaaaatgggcgcagagggtattcgtgacctgctgcgtggcatacccctgactcaggaa
attgagcagatccgtaatgaactgcgggagagcaattccgacacgaagaccaagaagctc
agcaagcggttgaagatcctggaggcctttgaacagtcgggcaatcgtcctgaatggatg
atcatggaagttcttccggtgctgcccccggacctgcgccccctggtgccactggatggc
ggccgttttgcaacctctgatctcaacgatctctaccggcgggtcatcaatcgcaacaac
cggctcaagcgcctgctggaactaaaggcgccggacatcatcgtgcgcaacgaaaaacgc
atgttgcaggaagccgtggacgcgctgctcgataacggtcggcgcggacgtgccatatcg
ggacccaacaaacgcccactcaagtcacttgcggatatgatcaagggcaagcagggccgc
ttccgtcagaatctgctgggtaagcgggtggactactccggccgctcggtgatcgtcgtc
ggacctgagctgcgcctgcaccagtgcggtttgccgaagaagatggccctggagttgttc
aagccattcattttcaacaagttggaagagcgtgggctggcgaccaccatcaaggccgcc
aagcgtttggtcgagcaggaaaaaccggaagtctgggatatccttgaagaggtgattcgc
gaacatccggtcatgctgaaccgcgcgccaaccttgcatcgtctgggtatccaggccttt
gaaccggtcctgatcgaaggcaaggccatccaactgcatccactggtatgtgctgcatac
aatgcggattttgatggcgatcagatggctgtgcacgtcccgctgtcgctggaggcgcag
ttggaagcccggaccctgatgatgtccaccaacaatattctcagcccggccaatggtgag
cccgttatcgtcccgtcccaggacatcgtcctcggactctactacgtcagccaggagcgg
gccgacgccaagggcaccggcggagtcttcgcggatgcggcagaggtgcggcgcgcttat
gaaacgggcaacctgggtcttcacgcccgtatcaccgtgcgctttcgcggtgagcgtatc
gataccacggcaggacgcgccctgctcggggatattctccctgagggccttccgttcagt
gtcatcaaccgggtgctgaagaaaaaggtgatcggcgaactcatcaatacctgttaccgg
cgtttgggtatcaaggatacggttatctttgcggatcagttgatgtataccggcttccgt
atggcgacacgcgcaggcatttccttcggtgctggggatatggtcacgccgctggaaaaa
gagggcattctggctcggtccgaagatgaggtcaaagccattcaggcccaatacacctcg
ggtctggtgactgagggtgaacgctataacaaggtcgtcgacatctggtcgcgggctacc
gatgaagttgccaaagccatgatggatcgggtcagtaaggataccgtgtacctcccggac
ggcagctcggtgcagcaggattcgttcaactcgatctttatgatggcggattccggcgcc
cgaggttcggcggcgcagattcgccagcttgcaggtatgcgcggcctgatggcgaagccc
gacggttctattatcgagactcccatcaccgcaaatttccgcgagggactcaacgtcctg
caatacttcatttccactcacggtgcccgcaaggggcttgcagataccgcgctgaaaacc
gccaactccggctatttgacccggcgtctggtagacgttacccaggatctggtggtggtc
gagaccgattgcggatcggaggaaggccttcccatgacctccctcgtcgagggcggtgag
atcatcgaacctctgcgcgaccgcgtgctgggtcgtgtagttgcggaggatgtggtccac
cccaacaccggtgagattgtcatcccccgcaataccctgctgacagagcggcatctcagt
cagttggacgagctgggtgtggatgcactgaaggtacgttcgcccctgacctgccggtca
cgccatggggtctgtgcactgtgttatgggcgtgacctggcacgtgggcatctagtcaat
gcgggtgaggcagtcggcgttatcgctgcgcaatccattggtgaaccgggcacccagctc
accatgcgtactttccacatcggtggtgcggccagtcgttctgctgcgcaaagcagtatc
gatatcaagcagggcggggtttttcgttatcagcccaaccttcgcctggtcacgcactcc
agcggacgccacgtagtggtgggccggaatggggaagttaccgtcactgacgaacaaggc
cgggaaaaagagcgttacaaggtgccctatggtgccaccattctggtggatgacaacgcc
gcggtcacagcgggtcgtcgggtcgcggaatgggatccgcatacgcggcccattgtcagt
gaggtcggtggcaaaatttctctgaaagatgcggtggaaggcgcgagcgtagccatccag
accgacgagatcaccgggctgtcgacacttgtcgtcatcgacgcgaagcaacggccaccc
caggggcgcgatttgcggccggtgatcagtctgctggacgagcatggccaggacctgaag
ctgcccggtactgacctgcccgcacgttatttcctgccggcaaaggcgattatcgcggtg
cacgaaggtatggagattcatcccggagacattctggcacgtctgccggtgggtaccaca
aagacgcgcgacattaccggtggtctgccccgtgtggcggaactgttcgaggcccggcgt
cccaaggacttcgctgttatcgcggagcatgagggcatcatcggcttcgggaaagacacc
aagggcaagcagcgactgatcatcaccgacgagagcggggaacagcatgaatatctgatt
cccaagggtcgccatgtgaccgtgtacgaaggggagcgggtcagcccgggtgagcagctt
gtcgagggccagccggttccgcacgatatcctgcgtgtgttgggtgtgcaggctctcgcc
aactacattgtcgatgaggtgcaggacgtataccgtctgcagggcgtgcgtatcaatgat
aagcacatcgaagtcattctgcgccagatgctgcgtagggtcgaagtgacgtccagtggg
gacagtaccttcattcccggagaccaggtggatcgggcacgggtggaagatgaaaacatc
gcgctggaagctgccggcaaagaactgccgcgtttcacgccgatgttgctgggcatcacc
aaggcaagcctgtctaccgaatctttcatctcggccgcaagtttccaggaaaccacccgc
gtactcactgaggctgcggtatccggcaaggtagacgacttgcgcggcctcaaggaaaac
gtcatcgtcggacgtttgattccggcgggaacgggcctggcctaccatgagcatcgccga
cggctgaaccggggtgaacctgtcctttccttggagactgcggtgccgcgggatatgccg
gtatcggtaagcgatacgccgtaa
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