Acidithiobacillus ferrooxidans ATCC 53993: Lferr_2548
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Entry
Lferr_2548 CDS
T00758
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
afe
Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Lferr_2548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afe03400
]
Lferr_2548
Enzymes [BR:
afe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Lferr_2548
DNA repair and recombination proteins [BR:
afe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Lferr_2548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
RecD_N
AAA_11
Helicase_RecD
AAA_22
SH3_13
PhoH
UvrD-helicase
AAA_24
DEAD
SLFN-g3_helicase
nSTAND3
AAA_5
ResIII
Mg_chelatase
CREPT
UvrD_C
ATPase
Motif
Other DBs
NCBI-ProteinID:
ACH84742
LinkDB
All DBs
Position
2519649..2521601
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AA seq
650 aa
AA seq
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MNQPMTSLMIDQLRAWTSAGWLRPLDLAFAQFLIRLDPQAPALLPLAGALLARLEGEGHT
CIALEDFLGAPERFLDWPAPGHAMLATALGDWPHAAQWTETLARSRCVQVTERNAPVPAN
GAETPLVLSAARLYLRRYWRDQQFIAEALRQRAQQRVADAANPEALRPWLEQLFPASDEP
GDALPWQKIACALALRSHFSIITGGPGTGKTYTAARFMALLMATSSTPLRIVLAAPTGKA
AVRIDESLQSAVGTLPQLSQIPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLEL
DVLVVDEASMIHQEMMAALLRALPPAARLILLGDQDQLASVEAGAVLAELSLGSGKYDAE
TCHYMQASCGAAPRPGDNGPSPLAANIIRLQRSHRFNAEIGALADAVHGGHPETAVRILQ
TAHTGTLAWQPAPAIHRILELARPESAYGRVWQAAGQPPPKDRQQHSAWVKTILNDYAGF
RILCALRQGPWGVTGINRAIEDYLQRQGILQSRGLWYAGRPTLVTRNDPNLGLSNGDIGI
ALPDPDKRLRVYFPNSEEAPRAILPSRLNHTESAWAMTVHKAQGSEFAHTVLILPPEDSP
VLSRELLYTAITRARKCFTLIAPRERLENAIQRQTRRMSGLHAALYDPRR
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcccatgaccagcctcatgatcgaccaactccgcgcctggaccagcgccggc
tggctacggcccctcgaccttgccttcgcgcagttcctcatccgcctggacccgcaggcc
ccggccctcctgcccctggcgggcgctctcctcgcccggctggagggagaaggccacacc
tgcatcgcgctggaagacttcctcggcgcacccgaacgcttcctggactggcctgcgccg
gggcacgccatgctggcaaccgcactcggtgactggccccatgccgcccaatggacagaa
accctcgcccggagccgctgcgtacaggtcaccgagcgcaacgcccccgtcccggcaaac
ggcgcagaaacgcccctggtcctcagtgccgcccgcctctatttgcgccgctactggcgt
gaccagcaattcatcgccgaggccctgcgccagcgcgcccaacagcgcgtcgccgatgcc
gccaaccccgaggcattaagaccctggctggagcaacttttcccggcgtctgacgaaccc
ggcgacgcactcccctggcaaaaaatcgcctgcgccctcgccctgcgcagccacttcagc
atcatcaccggcggccccggtaccggcaaaacctacaccgcagctcgcttcatggccttg
ctcatggcgaccagcagcacacccctgcgcatcgtgcttgccgcccccaccggcaaggcc
gccgtgcgcatcgacgaatccctgcagagcgcggtcggcactcttccgcaattgagccaa
atacccgatatgactgccgccttcgcccgcctgcgtccggcgcgcaccctgcacagcctg
ctcggcgcccgccccgacagtcgtcgctttcgccacgatgctgccaaccccctcgaactg
gacgtactcgtggtggacgaagcctccatgattcatcaggagatgatggccgccctgctc
cgcgccctgccgcctgcggcccgcctcatcctcctcggcgatcaggaccagcttgcctcc
gtcgaagcgggcgcggtgctggccgaactcagtctcggcagcggtaaatatgatgccgag
acctgccactatatgcaggccagttgcggtgccgcgccgcggcccggcgacaacggcccc
agcccccttgccgcaaacatcatccgcctgcaacgcagccatcgcttcaatgcagaaatc
ggcgcgctggcggatgccgtgcatggcggccaccccgaaaccgccgtccgcatcctgcaa
acggcgcacactggcactctcgcctggcaacccgcccctgccatccaccggatactggaa
ctggcccgcccggaaagcgcctatggtcgggtctggcaagccgcgggccagccgccaccc
aaagaccggcaacaacatagcgcatgggttaaaaccatcctcaacgactacgctggcttc
cgcatcctctgtgccctgcgccaaggcccctggggcgttaccggcatcaaccgcgccatc
gaagactacctgcagcgccagggcatcctgcagagccgcggcctttggtatgccggccgc
cccaccctcgtcacccgcaatgaccccaacctcggtctcagcaatggcgacatcggcatc
gccctgcccgacccggataaacgcctgcgcgtctacttccccaatagcgaagaggccccc
cgcgccatcctccccagccgcctcaaccacaccgaaagcgcctgggccatgaccgtccac
aaggcacagggttccgagttcgcccacaccgtcctcatccttcctccggaagacagcccc
gtcctcagccgcgaactgctctacacggccatcacccgcgcccgcaaatgcttcaccctc
atcgccccccgggagcgactggaaaacgccattcagcgccagacgcggaggatgagcgga
ttacacgcggcgttatatgatcccaggcgctga
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