Alcaligenes faecalis JQ135: AFA_05370
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Entry
AFA_05370 CDS
T05446
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03030
DNA replication
afq03430
Mismatch repair
afq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFA_05370
03430 Mismatch repair
AFA_05370
03440 Homologous recombination
AFA_05370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afq03032
]
AFA_05370
03400 DNA repair and recombination proteins [BR:
afq03400
]
AFA_05370
Enzymes [BR:
afq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AFA_05370
DNA replication proteins [BR:
afq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AFA_05370
DNA repair and recombination proteins [BR:
afq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AFA_05370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ASR88929
UniProt:
A0A9N7D816
LinkDB
All DBs
Position
1183636..1187112
Genome browser
AA seq
1158 aa
AA seq
DB search
MSETTPSFVHLRSHSEFSVVDGIARIPEMIKKAQAYGQPALALTDLCNLFGQIKFYTSAR
KAGLKAIMGCDIWLQNEEDREKPSRLLLLVQNEAGYLSLCDILTRAWLGNQYKGRAEVQR
AWLKECSGLIALSGGRMGDIGHALADGNLDLARDCARHWEDLFPGAFYIELQRSGADGDE
LYVQAAMRLAAELELPVVATHPIQFIARDDFRAHEVRVCIAEGEQLANPKRVKRFTPEQY
FLSTDEMQQRFADVPVALQNTLEIAKRCNLELELGKPYLPDFPTPDGMSLGDFLIQQAKD
GLEIRLTQLYADPQEREKQRPTYEERLMWECNTIISMGFPGYFLIVADFINWGKHNGVPV
GPGRGSGAGSLVAYSMGITDLDPLRYDLLFERFLNPERVSMPDFDVDFCQDNRERVIDYV
KQKYGRQAVSQIATFGTLGAKAVVRDVGRVLELPYSLCDGLSKLIPFNPADPWTLERALA
DEPAFRERYENDEEVKALIDLARPLEGLTRSVGMHAGGVLIAPGKLIDFCPLYAQSGPDA
NAVSQYDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNADKREFDIMALPLDDDASY
KLLCEGNTTAVFQLESRGMKELLRSLRPSTFEDIIAMLALYRPGPLESGMVVDFVNRKHG
RAEVDYFHPDLESTLSSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAK
HRVLFEEGAVKKGHDPELAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAHHPAEF
LAATLLSDMDDTDKVQIFWKDALANGVEVLPPDINASNYRFEPVRDSYTEKGLPPRTMRY
GLGAVKGTGQAAVEAIVEARKQGGPFTSLFDFCRRVDRHQVNKRTIEALVRAGAFDSIDE
NRAALLASIGAATEAAEQAERSANQSSLFDDDSNDIVEGEVAKVAPWSLQDRLRQEKTAL
GFYFSGHLFDAWRDEVRRFAPTPLARLEASRSPQWFAGVLSAVRVRMTRRGKMLYAMLDD
GSAQLEVAIFNELFEEHRQRLKEDQLIIIQGKVSNDDYTGGLRINADSIFDLQLAREARA
SCLSIALNNNADAQRLQALLAPHRAEQQGGVPVEVQLQRPDYECVVQLGPQWRVRLADSL
LEQLEGWDATHEVEISYR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaccaccccttcctttgtccatttgcgatcccactcggagttctccgtggtg
gacggcatcgcccgtattcccgaaatgatcaaaaaagcgcaggcctatgggcagcctgca
ttggcgttgacggatttgtgcaacttgtttggacagatcaagttctatacctcggcgcgt
aaagccgggctgaaagccatcatgggttgtgatatttggctgcagaacgaggaagaccgc
gaaaaaccgtcacgcctgcttttgctggtgcaaaacgaagcagggtatttgagcctgtgc
gacatcttgacccgtgcctggctgggcaaccagtacaaaggacgtgccgaggtacagcgc
gcctggttgaaagagtgtagtggcctgattgccttgtccggcgggcgtatgggtgatatt
ggccatgccctggccgatggcaatctggacttggcccgggattgtgcccgccattgggaa
gacttgttccccggtgccttttatattgaactgcagcgcagcggtgcggacggcgatgag
ctttatgtacaagccgccatgcgtttggctgcagagctggaattgccggtggtggcgacg
cacccgattcagtttattgcacgggacgatttccgtgcgcacgaggtgcgggtatgtatt
gctgaaggcgagcaattggccaaccccaagcgtgtgaagcgttttacgccagagcaatac
tttctcagcacggatgaaatgcagcagcgttttgcggacgttcctgttgcactgcaaaac
acgctggaaattgccaagcgttgcaacctggagctggagttaggcaaaccttatctgccc
gacttcccgacacccgatggcatgtcgctgggcgactttttgatccagcaggccaaggac
ggtctggaaatccgcttgacgcagctgtatgccgatccccaggagcgcgagaagcaacgc
ccgacctacgaagagcgcttgatgtgggagtgcaacaccatcatctccatggggttcccc
ggctacttcctgatcgtggcggacttcattaactggggcaagcacaatggtgtgccggtc
ggaccgggccggggctcgggggcggggtcgctggtggcctacagcatggggattaccgac
ttggaccccttgcgctatgacttgctgtttgaacgtttcctgaaccccgagcgggtgtcc
atgcctgactttgacgtggacttttgccaggacaaccgcgaacgcgtgattgattacgtg
aaacagaagtatggccgccaggctgtcagccagattgccacattcggtaccctgggtgcg
aaagccgtggtgcgtgacgtcggtcgtgtgctggagctgccctacagcctgtgcgatggc
ttgtccaaactgattcctttcaaccctgctgatccctggacgctggaacgggcgctggcc
gatgagcctgcctttcgcgagcgttacgagaacgacgaagaagtcaaagccctgatcgat
ctggcccgccccttggaaggcctgacccgtagcgtgggcatgcacgccgggggggttctg
attgcgcccggcaagctgattgatttttgcccgctgtacgcgcagtccggccccgatgcc
aacgccgtgtcgcaatacgacaaggacgacgtggaggccgccggtctggtcaagttcgac
tttctgggcctgcgtaacttgaccattctggactgggccgtgcgctatgtgcgccagttc
aatgccgacaagcgcgagttcgacatcatggccttgccattggatgacgacgcctcctac
aaactgctttgcgaaggcaataccaccgccgtgttccagttggaatcgcgcggtatgaag
gagctgctgcgtagtctacggccctccacctttgaagacattatcgccatgctggccctg
tatcgtccggggccactggagtcgggcatggtggtggacttcgtgaaccggaaacacggt
cgggctgaggtggattattttcacccggatctggaaagcacgctgagcagcacctacggg
gtgatcgtctaccaggaacaggtgatgctgatctcgcagattatcggtggctactcactg
ggtggtgccgacttgctgcgtcgtgccatgggcaagaaaaagcccgaggaaatggccaag
catcgcgtcttgttcgaggaaggggcggtcaagaaaggtcacgaccctgagctggcggtg
aagttgtttgacctgatggaaaagttcgcgggttacggctttaacaagagtcactcggct
gcttacgcgctaattgcgtatcagacggcctggttgaaagctcaccatccggccgagttt
ctggccgcgaccttgttgtccgatatggacgataccgacaaggtgcagattttctggaaa
gacgcgctggctaacggtgtggaagtcttgccacccgatatcaacgcgtccaattaccgc
tttgagccggtcagggacagctatacagaaaaaggtttgccgccgcgtaccatgcgttac
ggcctgggggctgtgaaagggacgggtcaggccgccgttgaagcgattgtggaagctcgc
aagcaaggtggtccttttaccagcctgtttgatttctgccgtcgcgtggaccgtcatcag
gtcaacaagcgcacgattgaagccttggtacgcgccggtgcttttgattcgattgacgaa
aaccgcgccgccttgctggccagtattggtgccgccacggaagcggctgagcaggccgag
cgtagcgcgaatcaatcctcgctgtttgatgatgactccaacgatatcgtggaaggcgag
gtcgcgaaagtcgccccttggagcctgcaagatcgcttgcgtcaggaaaagacggcactg
ggtttttacttcagcggccacttgtttgacgcctggcgggatgaagttcgtcgtttcgca
ccgacacccttggcacgcctggaagcctcgcgcagcccgcagtggtttgctggcgtgctg
tcagccgtgcgggtacgcatgacccgtcgcggcaagatgctgtatgccatgctggatgac
ggctcggcgcaactggaagtggcgatcttcaatgaactgtttgaagagcaccgccagcgt
ctgaaagaagaccagttgatcatcattcagggcaaggtcagcaacgacgactacaccggc
ggtctgcgtatcaatgccgattcgatttttgatctgcagttggcccgtgaagcgcgtgcc
agttgcttgagcattgctttgaataacaatgcggacgcgcagcgtttgcaagccttgctg
gcgccgcatcgcgccgagcaacagggcggtgtgccggtagaggtgcagttgcaacgcccc
gattacgaatgtgtggtgcagctaggcccgcaatggcgtgttcgtctggctgattccttg
ctggagcagttggaaggctgggatgccacacacgaggtggagatcagctaccgatga
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