Acidithiobacillus ferrooxidans ATCC 23270: AFE_1433
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Entry
AFE_1433 CDS
T00810
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFE_1433 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afr03019
]
AFE_1433 (rhlE)
Enzymes [BR:
afr01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
AFE_1433 (rhlE)
Messenger RNA biogenesis [BR:
afr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFE_1433 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACK80627
UniProt:
B7J9N0
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All DBs
Position
1235720..1236976
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AA seq
418 aa
AA seq
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MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI
LHKLAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQ
MQKLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLP
KKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSH
LIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV
LVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ
DVEKLLRRSFDREIVIGFEPRQSFSGHAPSAAARRPAQAAGRGRPGSGAVPSGRARRA
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttttgaatctctgggcctttctgagcctatctggcgtgcggctgccgaacgt
ggctacaccagtcccacccctattcaggaacaggccatcccggtagtcatgtccggtgtc
gatctgctggcgggtgcacagacgggtaccggcaagactgccgcgtttgccatgcccatc
ctgcacaaactggcggttaccgcaggtagtgcgtcacgcgctccttccagtgtgcgtgcg
ctgattctggtccccacccgcgaactggcggcgcaggtggaggcgagcgtgcagttgtac
gggcgctatcttcccctgcgctccctggtgctcatcggtggggtcaagatcaatccccag
atgcagaaactgcgccgcagcgtagatatcctggtagccacccccggtcgcctgctggat
catatccagcagcgcagtgtcgacctctctcacgtcgaaattctggtgctcgacgaagcc
gatcgcatgctcgacatgggctttatccgtgacatccggcgcatccttgcggtattgccg
aaaaagcgccagaacctgctgttctcggcgacgttttcgccggaaatccgtgggctggcc
gatggcctgttgaacaacccgaccagtgttgaggtcgcggcacgcaatgccactgccgat
aatgtcgcccagcgggtttttgccgtcgatcaggaccgcaaacgcgagcttctttcccat
ctgatcgaagaacatcaatgggggcaggtgctggttttcactcgtaccaagcatggtgcc
gaccgccttgccaggcacttatcgcaggatggcatgcaggcgatggcaatccacggcgat
aagagccagggcgcccgtacccgcgccctggcggagttcaaggaaggcaaagtgcaggtc
ctggtggcgacggatatcgccgctcgcggtatcgacatcagcgagctgccccacgtggtg
aactttgaacttcctcatgtgccggaagattatgtccatcgtatcggacggaccggtcgc
gccggtaacaacggccaggccgtatcgctggtgagcagcgaggagcgtaagcagttacag
gacgtggagaagctcctgcggcgctccttcgaccgggagatcgtcatcggtttcgagccg
cggcagtctttctccggtcatgcaccgtcagcggcggcgcgtcgtccagctcaggccgca
gggcgaggtcggcccggttcaggagcggtgccttcgggtcgtgcccgccgcgcctga
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