Acidithiobacillus ferrooxidans ATCC 23270: AFE_2194
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Entry
AFE_2194 CDS
T00810
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFE_2194 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afr03019
]
AFE_2194 (recQ)
03400 DNA repair and recombination proteins [BR:
afr03400
]
AFE_2194 (recQ)
Enzymes [BR:
afr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFE_2194 (recQ)
Messenger RNA biogenesis [BR:
afr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFE_2194 (recQ)
DNA repair and recombination proteins [BR:
afr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFE_2194 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
ACK78653
UniProt:
B7J5I2
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All DBs
Position
1945615..1947426
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AA seq
603 aa
AA seq
DB search
MPILPTQQPVEILRHTFGYDAFRVPQEEVIQTLLAARDALVLMPTGGGKSLCYQIPAIAM
AGTGVVISPLIALMEDQVNALRQAGVAAAALNSSASPAESRATEEALLQGCLDLLYIAPE
RLLQERTLNLLQRATVNLFAIDEAHCVSQWGHDFRPEYLQLRVLHERFPLVPRIALTATA
DSKTRAEITERLTLQEAAVFIRSFDRPNIRYHINSGSQGARNALLRFIRDRHAGDAGIVY
CLSRKRVEEVAEWLQGEGLDALPYHAGLGIDERRRNQQRFQQDEGVIIVATIAFGMGIDK
PNVRFVAHLNLPKSIEAYYQETGRAGRDGLPAEAWMHYSLRDVVQLRQMIQQSEADLPRK
QMEGHKLDAMLALCETTDCRRQTLLGYFGESLSSPCGNCDNCLQPPATWDATVAAQKALS
AIHRTGQRFGVQYLVDVLLAREDPRIQQQGHDRLSVYGIGKELSANAWRALFRHLLLRGL
VEVDHDGHGGMRLSPSSRPLLRNEEKLTLRQHESPVPRQREQRPEIAPRDTALWEALRQH
RRELAQAQGVPPYVIFHDATLMEMLHRRPRDLEALAALPGIGERKLAAYGTSFLKILHRD
RPS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcctccctacccagcagccagtggaaatcctccgccacacctttggttacgac
gccttccgggtgcctcaggaggaggtaatccagaccctcttggcagcccgggatgcgctg
gtgctcatgcctaccgggggcgggaaatccctgtgctatcagattcccgccatcgccatg
gcagggacgggcgtagtcatttcaccactgatcgcgctcatggaagatcaggtcaacgcc
ctgcgtcaggcgggtgtcgctgccgctgccctgaattccagtgccagccccgcagaatca
cgcgctaccgaggaggcgttgctgcagggctgcctcgatctgctctacatcgctccggaa
cgcttgctgcaggaacgcaccctcaatctgctgcaaagggccacagtcaatctcttcgct
attgacgaagcccattgcgtgtcccagtggggtcacgacttccgcccggaatacctgcaa
ttacgagtgctgcatgagcgctttccgctggtgccgcgcattgccctcacggccaccgcc
gactcaaaaacccgcgcggaaatcaccgaacggctgacgctacaggaagccgccgtcttt
atccgctcctttgaccgacccaacatccgttaccatatcaatagcggtagtcagggcgca
cgcaacgccttgctgcgattcatccgcgaccgccacgccggagatgccggcatcgtatat
tgcctgtcccgcaagcgcgtggaagaagttgccgagtggctgcagggcgaagggctggac
gccctgccctatcatgccggtttgggtatcgatgagcggcgtcgtaaccagcaacgattt
cagcaggatgaaggggtgatcattgtcgccaccatagccttcggtatgggcatcgacaaa
ccgaatgtccgctttgtagcgcacctgaatctgcccaagagcatcgaggcctactatcag
gaaactggacgcgccgggcgcgacggcctgcctgcagaagcctggatgcattacagtctt
cgtgatgtcgtgcaattacggcagatgatccagcaatccgaagccgacctgccgcgcaaa
cagatggaaggacacaagctggatgctatgctcgcgctttgcgaaaccacggactgccgc
cgtcagaccctgctcggctactttggcgaaagcctctcctccccctgcggcaattgcgac
aattgcctgcagccgccggccacctgggatgccacggtggccgcacagaaagccctgtct
gccatccatcgcaccggccagcgcttcggggtacagtatctggtagacgtattgctggct
cgggaagatccacgcattcagcaacaggggcatgaccggctcagcgtgtacggcattggc
aaagaactgtctgccaacgcgtggcgcgccctgtttcgccacctcttgctgcgcggactc
gtggaagtggatcacgacggccacggtggcatgcgcctcagcccatccagtcgcccgctc
ctgcgcaacgaagaaaagctgaccctgcgccagcacgaaagcccggtccccaggcaacgc
gaacaacgcccggagatcgcaccccgcgacaccgcgctctgggaagccctgcgccagcac
cgccgtgaactggcgcaggcccagggcgtgccgccctacgtcatttttcacgacgccacc
ctcatggaaatgctccatcgacgcccgcgtgacctggaagcactggctgcgctccccggc
atcggcgagcgcaaactggcggcttacggtacatcttttctgaagatactgcatcgcgat
cggccttcctga
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