Allofrancisella frigidaquae: E3E15_06420
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Entry
E3E15_06420 CDS
T06608
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3E15_06420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afri03021
]
E3E15_06420 (rpoC)
03400 DNA repair and recombination proteins [BR:
afri03400
]
E3E15_06420 (rpoC)
Enzymes [BR:
afri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3E15_06420 (rpoC)
Transcription machinery [BR:
afri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3E15_06420 (rpoC)
DNA repair and recombination proteins [BR:
afri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3E15_06420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Minor_capsid_1
Motif
Other DBs
NCBI-ProteinID:
QIV94999
UniProt:
A0A6M3HUT7
LinkDB
All DBs
Position
complement(1372555..1376808)
Genome browser
AA seq
1417 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDEEYIEALENYGYEFEASMGA
EAIRELLSDTDIESEIEQLQVEYEESKSAAKKEKAIRRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRFGGHATTIKQAKRMVEIEESVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKDGAKGEGKLFASYEDVSRAYNSGTI
DIHAKIKLRVDRQVFDTKGNTYNEKGVVNTTVGRALLINILPEGLSFSLINKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTISGISVGINDMTIPADKDTKVEKAEQEIK
HVTEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDKVIVSGQEKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVIIEEDCGTDDGLMFSAIVEDGEVKVPLTERALGRT
LAADVVTEKGIVLLESNTLLDENLVELLDDNGIDMIKVRSPITCKTRRGLCSKCYGRDLS
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGVTISDIKVKTAGKIKFKNIR
TVTNKEGQDIVISRAAEIIVSDTMGRVREQHRIPMGAVLPLASGKAVEIGDVIATWDPHA
QPIVTDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSLSQRITSKNLKPVVKIVDNDG
NELKSIALAVGAVLNVTEDMQISIGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKEA
AILSPCDGIVRLGNRDTKEKQRIEILDKRGHIVEEILLSKSRHLVVFDGEAVSKGDVLAD
GPTDPHDLLKYKGLEAFADYILFEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGGS
KFVREETVELVRILEENDKLSLEGKKEVVYEPVLMGITRSSLSTESFLSAASFQETTRVL
TEASINSQIDQLRGLKENVLIGRLIPTGTGLAVRKEAAKIEKLKEELGVEDGMAFTDATA
FGIDSSSFENYQHVSEEKDINDDIEESLRNALESLDF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaactacaatagtaaaaagtttgatattataaaaata
tctttagcatcaccagaggttatacgctcgtggtctcatggtgaggttaaaaaaccagaa
actattaactatagaacatttaagccagagagagatggtttattttgtgctaaaattttt
ggtcctgttaaagattatgaatgtttatgtggtaaatataagcgtttaaaacatcgtggt
gtggtatgtgagcgttgtggtgttgaagtcgagcaagctaaagtaagaagagaaagaatg
ggacacattgatttagtgtgtccagtagtacatatttggtatctaaaatctttaccttct
aggataggtttgtttttagacatgcctcttaaaaatgtagagaaggtattatactttgag
tcatatatagttactgatcctggtatgactccattagagaaaaagcaattacttactgat
gaagaatacatagaagctctagaaaactatggatatgagtttgaagcttctatgggtgca
gaggctattagagaattgttatctgatactgatatcgaatcagaaatagagcagctacaa
gttgaatatgaagaaagcaaatctgcagctaaaaaagaaaaagctataagaagattaagg
cttctagagacttttcaagcttctggtaataaacctgagtggatggtaatgactgtctta
ccagttcttcctcctgatttaagaccacttgtaccaatagaaggtggtaggtttgctaca
tctgatcttaatgatttatatcgtagagtaataaatagaaacaacagacttaaaaagcta
ttagaccttaatgctcctgatattattgttagaaatgaaaaaaggatgttacaagaggct
gttgatgctttattagacaatggtagacgtggaagggcggtaacaggttcaaataaacgt
cctcttaaatcattagctgatatgattaaaggtaaacaaggtcgtttccgtcaaaactta
ttaggtaagcgtgttgactattctggacgttctgtaattacagtaggcccatctttaaga
ttgcacgagtgtggtttacctaagaaaatggctttagagttgtttaagccatttgtttac
tctaagctaagatttggtgggcatgcaacaactattaagcaagctaaaagaatggttgag
atagaggaatctgtagtttgggatattttagaagttgtaattaatgagcatccagtacta
ttaaacagggctcctacacttcataggttaggtattcaagcatttgagccgaagcttatc
gaaggaaaagctattcagttgcacccattagtgtgtgcggcttttaacgctgactttgac
ggtgaccaaatggctgttcacgtgccattaacagttgagtctcagctagaagctagagtt
ttgatgatgtctactaataacatcttatcaccagcttcaggacagcctattatcactcct
actcaagatatagtgttaggtttatactatattacaagagagaaagatggagcaaaagga
gaaggtaaattatttgcaagttatgaagatgttagtagagcgtataactctggaactata
gatatccatgctaaaatcaaattaagagtggatagacaagtatttgatactaaaggtaac
acttataatgaaaaaggcgttgttaatacaactgttggtagagcattgcttatcaatata
ttacctgaagggttatcattctcgttaattaataaggttttagttaagaaagaaatctct
aagattattaaccaagcatttagagtattgggtggtaaagctacagtcgttctagctgat
aagcttatgtatgctggttttaaatactccactatttctggtatttctgtaggtataaat
gatatgactatacctgctgataaagacactaaggtagaaaaagcagaacaagaaattaag
catgtaacagagcaataccagtcttcacttattactgagaatgaaagatacaataatata
atcaatatttggagtaaaacttcagatgaagtcggtgcttcgatgatggatgctatatct
aaagataaagttattgttagcggtcaagaaaaagagattgaatcatttaactctgtatat
atgatggctaaatctggtgctagaggttcttataaccagatgagacagcttgcaggtatg
cgtggtttgatggcaaaacctgatggcacgatgattgagacggctattacagctaacttt
agagagggtttatcagtattacaatactttacatcgactcacggtgctcgtaaaggtttg
gctgatacagctcttaaaacagctaacgctggttatttaactcgtagactagtggatgtg
gctcaggatttagtaatcattgaagaagactgtggtacagatgatggtttaatgttctca
gctattgtagaagatggtgaagttaaagtgcctcttacagaaagagcattaggtagaaca
ttagcggctgacgttgttacggaaaaaggtatcgtattgttagaatcaaatactttatta
gatgaaaatttagtagagctattagatgataatggtattgatatgattaaggttagatca
ccaatcacatgtaagactcgtagagggttgtgttctaagtgttatggtagagatttatct
cgagaaagaaaggttaatgttggtgagtctgtaggtgtaattgcagctcaatcaattggt
gagcctggtactcagttaacaatgagaacattccatactggcggggcagcatctttaggt
gtaacaattagtgatatcaaagttaaaactgctggtaaaatcaagtttaaaaatattaga
acagtaacaaataaagaaggccaagacattgtaatatcacgtgctgctgaaatcattgtt
tctgatactatgggtagggttagagaacagcacagaatccctatgggtgcagtacttcct
ctagcaagtggtaaagcagtagagattggtgatgtgatagctacctgggatcctcatgcg
cagccaatagtcacagatgtcgcaggtaaggttgttttagaggatgttattgatggtatt
acatctaaacatacttatgatgacctaactggccagcagactattgaaataacgtcgcta
tctcagagaattacttctaaaaacttaaaaccggtagttaaaatagttgacaatgatggt
aatgagttaaaatcaatagcattagctgttggggcagtgttaaacgttactgaggatatg
caaatttcgataggagatgttgttgccaaaattcctctagaagggtctaagaataaagat
attacagggggtctgcctcgtgttgctgaattatttgaggcaagacgtccaaaagaagct
gcgatactttctccttgtgatggtatagttagattaggtaatagagacaccaaagagaag
caaagaatagagattttagacaagcgtggtcatattgttgaagaaatattactatctaaa
tctcgccatttggttgtatttgatggtgaagctgtctctaagggtgatgtattagcggat
ggtcctacggatccgcatgatctacttaaatataaagggttagaagcctttgctgactat
atcctttttgaggctcaatctgtatatcgtatgcaaggtgttgtaattaatgataaacac
attgagactattgttagacaaatgcttagaaaggcagttattctagatgaaggtggcagc
aaatttgtaagagaagaaacggttgagcttgttagaattcttgaagagaatgataaatta
agtttagaaggtaaaaaagaagttgtatatgagccagtattaatgggtattacaaggtct
tctttgtctacagagtctttcttatcagcagcatctttccaagagacgacaagagtatta
acagaagcttctattaattctcagattgatcaactaagaggtcttaaggaaaatgttcta
attggtagattaattcctacaggtacagggctggctgtcagaaaagaagcagctaagatt
gagaagctaaaagaagagttgggggttgaagatggtatggcatttacagatgctacagca
tttggaatagacagttcgtcttttgagaattatcagcatgtaagtgaggaaaaagatata
aatgatgatatcgaagaatcattaagaaatgctcttgaatcattagacttctaa
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integrated database retrieval system
